Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01160 ATGGAAGAGTTGACGAAAGTGGAATTGGACTTGGCATATTTGTCCGAGAAGTTGGTAAATTACCACGTACTTTTAATGTGCCTGTTGACCCAGGAGCGGGATTTTGAATCGTTGATTTCTGAAGACGATTATATTTTGGATGATTCGATAGAGAAGGCGTTGGCTTTTGATCTCTTATCTGGGTTTTTGGATTTGGAGGTAAGAGAATTGGGCGATTTTATGGACACCCTCCATGCAGAAATCGAAAATACTCGTCATAAAATATCTTCTTGCAGACTACCAAGGGAGGTTGTCACTGCTTTAGAAGACAAATTACTTGATTCTGAGGCATCTTTGAAGCAATCCCGGCAACAGATTTTGGAAGTTACAATGCAATCGACAAAGTTGCAGAGAATCGTTTTAGCTCTCAGAGAGGGAAATGGTAAATTTAACGAGGATGTGGATATATCCGATAATATTTTTGCATGTAACATGAACGGAACGTCGAATTCGAGGATGAACGAACAATATCAACATGTTCTAAGGATGCTGGAAAAATCTCTATCCAGGGAGCTTGATCTCGAGAAAGAATTATCGGAATCGAGAAAAAGAGAAGAGGAAATGAGATTGAAGCTACACTATACGGAACAAGTAGCATTGCGAATGGAAGAAGCTGCAGAAGTCGTATGGGGTCGGTTTTTAGAGGTCGATAATAGAGCCGAGGTTCTCATGGGAATTTCAACTGAATTAGTTGGTCGAATCCAGATTGTTCAATTCAATTTGAACTGTTTGATTCAACGAGAAAACGAGATGAAAGCCAAATTTCAAGATTATGAAGAACAGCTGAAAGAAAAGGGCCTTGCTTTGCAAAGACTCGAGCCCAGCAAAGTAGAGAACAATACCAATAGTGCCAAATTTGCAGAACTGAGCAAAGAGGTGAAATCTCTCGAAAATCAGCTCGAAGAAACGAAAAATCTTCTCAAAATTGCAAATTCCTCTAACGCGGAGAGCAAGGAACAACTTATCGAAATGGAAAATCTTGTCGATTCTCTTAAAGAAAGTCTCGTAATAGAGGAAGGTCGAGCCGAAAATGCAGAGATGAAACTCTCGCAATTGACCGAGTCAAACTCGGAAATCGTGGAAGAGCTGAATTTTCTGAAAGACAGTGCAACGAATAAAGAGAAGAAGGTGGGTTCATTAGAGAAACAGCTGAGAGAAGTAGAGCTTCAATTGCAGCATGCAAAAGCATCCATGGAAGCCAGTCAGGAGCAACAAAACATGTTGTATAATGCCATTTGGGACATGGAAACACTTATCGAAGATCTAAAGTCGAAGGTTTCGAAAACCGACAACGTAGAGGAGCAATGCATTATATTATCTGAATCTAACATAGAACTTAATAAAGAAGTGGATTCCTTAAAGGCTAGGGTTGAATTCTTGGAGACATCCTTGGATAAAGCAAACACTGAAAAATATGAAAATTCAAAGGAGATTGGGTTCAGAAGCAAGTATATTATGGATTTGGTGATGAAACTCGCTATTGAAAGGGAGCGGATCGAGAAACAGGTAATGAATTCGTGTTTCATTGCTTTGCAAATAACCCGCAATTAG 1590 39.62 MEELTKVELDLAYLSEKLVNYHVLLMCLLTQERDFESLISEDDYILDDSIEKALAFDLLSGFLDLEVRELGDFMDTLHAEIENTRHKISSCRLPREVVTALEDKLLDSEASLKQSRQQILEVTMQSTKLQRIVLALREGNGKFNEDVDISDNIFACNMNGTSNSRMNEQYQHVLRMLEKSLSRELDLEKELSESRKREEEMRLKLHYTEQVALRMEEAAEVVWGRFLEVDNRAEVLMGISTELVGRIQIVQFNLNCLIQRENEMKAKFQDYEEQLKEKGLALQRLEPSKVENNTNSAKFAELSKEVKSLENQLEETKNLLKIANSSNAESKEQLIEMENLVDSLKESLVIEEGRAENAEMKLSQLTESNSEIVEELNFLKDSATNKEKKVGSLEKQLREVELQLQHAKASMEASQEQQNMLYNAIWDMETLIEDLKSKVSKTDNVEEQCIILSESNIELNKEVDSLKARVEFLETSLDKANTEKYENSKEIGFRSKYIMDLVMKLAIERERIEKQVMNSCFIALQITRN 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11862908 11864858 - Bda007651.1 Bda11g01160 16268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01160 529 Coils Coil 254 274 - -
Bda11g01160 529 Coils Coil 456 483 - -
Bda11g01160 529 Coils Coil 98 118 - -
Bda11g01160 529 Coils Coil 292 417 - -
Bda11g01160 529 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 1 517 IPR039976 -
Bda11g01160 529 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 1 517 - -
Bda11g01160 529 SUPERFAMILY Tropomyosin 288 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01160 - - - csv:101222192 612.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01160 Bda-Chr11:11862908 Bda13g01749 Bda-Chr13:40830880 1.52E-103 dispersed
Bda01g01188 Bda-Chr1:47182431 Bda11g01160 Bda-Chr11:11862908 4.31E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1011 . Blo16g01071 . Bda11g01160 Bpe13g01358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0511 . . . . . . . Bda11g01160 . . . Bma06g00749 . . Cmo15g00878 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006325 1 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01160 Bda_Chr11 FPKM 0.49711 0.0 0.0 0.0 3.144992 2.55989 2.605966 0.0 0.0