Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01162 ATGGATTTAGGTGGGAATGATAATTTTGAACTAGAAAACAGGACTGAGAATCCTATGAACTGTTCACCAAGTCTGTCCTCTGGCTGGCCATTCGGTGGAGACCACCTTGCAAACACGGCAATGGGATTGGCCAACTCAATGGTGGATTCTTTTGGTCCGAACTTCAATGATAGTGCAGCTTCTTTGAGAAGTGTTGATAGAACACTTGATATGAGTTGGAACCCACCAAATCAAATGATGAAAGGAATTAATTTATCGAATTTGATTCACTCGAGCTTACCTCAATTTCCAGCCGATTCTGCATTCATCGAGCGAGCAGCTAGATTATCTTGCTTCAATGGTGGAAATCTCATGGAAACAGCTGGTCCTTTCAGCGTTCCTCAACCTATGACTCTTTATTCTAGGAGTTTGGTGATTCCAGGTAATCAAGAATTTACAGCCATTAATGGGATGAGATCAGATACCATGGGACAGCCTCAAAAACATGAGAATAGTCATATAGGTGAAGTCTCTATGGAAGCTTGCTTGGAGGATGGAACTAGCAGTCCTAAGAATGAAGGACAAAATGAGAACCATATGAGATCTCATGATGAAGAAAAACAATGTACTGGCGGGTCGGAAGATGAAATGAGTGGTAGTGGTCAAGATGAACCATCTATGGTGGAGGGTAGATGTAAAGAGTCCTCTGGCAACAAAAAAAGGAAAAGGAGTAGGCAGAGTAATGGACTTGGCCAAGCCAAAGAAGCTGCACAACAAACCAGTGAATCTGCAAGGGATGATAATGAGATTCAACATAAGAACGATCAAAACCCATGTTCGGTTAACAACAAATCTACTGGAAAACAAGGTTCTCAAGCCTCCGAACCCCTCAAGGAAGAATACATTCACGTTAGAGCACGAAGAGGTCAGGCAACAAATAGCCATAGTCTTGCAGAAAGGGTTAGAAGGGAAAAGATCAGTGAACGAATGAAGTTTCTTCAAGACCTCGTACCTGGTTGCAGCAAGGTCACTGGCAAGGCGGTAATGCTAGATGAAATCATAAATTACGTACAGTCGCTGCAACGACAAGTAGAGTTTTTGTCAATGAAACTTGCCACTGTCAATCCACGGATAAATTTCAGTATTGATGGTCTTGCGAAAGATATACTTAAAACAAGGGCTGGTCCATCATCTTCTTTGGGCTACTCACCAGACATTTCTATGGCTTATCCTCCATTACAACTTTCTCAACAAGGGCTTCTTTCCTGGGGTGTTAATGGGATGGGCGGCTCTTCTGAAATTCTCCGAAGAACACTCGCTTCCCAGTTGACACCACTGACTGGTGGATTTAAAGAGCCTTCTCAGCCATCAAATGTGTGGGAGGATGATCTCCACAATGTTTTCCAGACGAGCTTTGGAACTTCAGCTCCTTCCAATACCCAAAATGTTGATGGTAAGATCTATCTATTATTTCCAGTTGATCATTCTCTTTACTCTATTCTTTATATCCTTTTATAA 1497 42.15 MDLGGNDNFELENRTENPMNCSPSLSSGWPFGGDHLANTAMGLANSMVDSFGPNFNDSAASLRSVDRTLDMSWNPPNQMMKGINLSNLIHSSLPQFPADSAFIERAARLSCFNGGNLMETAGPFSVPQPMTLYSRSLVIPGNQEFTAINGMRSDTMGQPQKHENSHIGEVSMEACLEDGTSSPKNEGQNENHMRSHDEEKQCTGGSEDEMSGSGQDEPSMVEGRCKESSGNKKRKRSRQSNGLGQAKEAAQQTSESARDDNEIQHKNDQNPCSVNNKSTGKQGSQASEPLKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRINFSIDGLAKDILKTRAGPSSSLGYSPDISMAYPPLQLSQQGLLSWGVNGMGGSSEILRRTLASQLTPLTGGFKEPSQPSNVWEDDLHNVFQTSFGTSAPSNTQNVDGKIYLLFPVDHSLYSILYILL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11889411 11893781 + Bda007653.1 Bda11g01162 16270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01162 498 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 372 IPR036638 GO:0046983
Bda11g01162 498 MobiDBLite consensus disorder prediction 189 205 - -
Bda11g01162 498 Gene3D - 300 373 IPR036638 GO:0046983
Bda11g01162 498 PANTHER TRANSCRIPTION FACTOR BHLH49 59 479 - -
Bda11g01162 498 CDD bHLH_AtBPE_like 293 378 - -
Bda11g01162 498 MobiDBLite consensus disorder prediction 1 21 - -
Bda11g01162 498 MobiDBLite consensus disorder prediction 177 290 - -
Bda11g01162 498 Pfam Helix-loop-helix DNA-binding domain 306 354 IPR011598 GO:0046983
Bda11g01162 498 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 59 479 IPR024097 GO:0006355
Bda11g01162 498 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 353 IPR011598 GO:0046983
Bda11g01162 498 MobiDBLite consensus disorder prediction 267 286 - -
Bda11g01162 498 SMART finulus 309 359 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02113 Bda11g01162 CCT
Bda01g02113 Bda11g01162 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01585 Bda-Chr1:51700642 Bda11g01162 Bda-Chr11:11889411 2.72E-47 dispersed
Bda08g00933 Bda-Chr8:17209090 Bda11g01162 Bda-Chr11:11889411 7.91E-54 dispersed
Bda11g01162 Bda-Chr11:11889411 Bda13g00303 Bda-Chr13:3849368 9.75E-47 dispersed
Bda01g02113 Bda-Chr1:57180782 Bda11g01162 Bda-Chr11:11889411 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16667 PF00010 HLH 6.20E-06 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01162 - - zju:107429134 523.087