Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01163 ATGTCGCTCGAGAATAAAGAATCGATACGATATCTGGTTTCATCGTCGTTGGTTTCCATTTCCGAGTTCTTAACATTGATAGAATGTGCAGAAAAAGAGAAAGATGTGTTCATGGAGATTGGGTGCTTCTTTTATAGAACTTCTCCGGCTATGAAGGAGTTTCAAAAAAACGAGAACCCACCAGAAAATGCAGAGGAGATTCTCAAATCTTTATTAAAAAGTATAAATTCTGCGAAAGATATAATGGAGAAGTTTCAGCAAGATATGATCAATCCAGTTTCAAATCATCAACCAATATCAGAACTTGAAGAGGTGATTAAACAAATGGGCGAATACCTGCGGTCAGTTCCATCTTCGACTTTTGGAGACGAAGAATACGCAAAAATAGCCGTCCGATCTCTCGCAGATGAGATGCAGAACATCCAGTTTGAAATCGGAGAAAGTCGAGCTTCTCCGACCAAAATAACGGATAAAGAGATTCCCCCAAAGGACCAATCAGGAGAAGAAGTAGACACCGATCTCTACCCTGTACAAATTGAACGTTCTAAAGATAATCAAGAAGCGTTAGATCCGGTAGAGTCGATTGGCCGTCGAAAGAAAAGCCGAAAGACGAACAGATTGTCGAAATTGCAGCCGGAAAAGGGTCGATTTATGGAGCCTCTTTACGAGACCTTCTTCTGTCCATTGACAGAGGAGATAATGGATGATCCAGTTACAGTACAATCTGGAGTCACCTATGAAAAACAGGCAATTCTGGAGTGGTTTGAACAGTTTGCAGATTCAGAAGAAATTATCTGCCCAATCACAAAGAAGAAATTGGAGTCTAAATCATTCACTCCCAACAAGGCTATAAAATCTACGATAAACCAATGGACAGAACGGAACGAAGAGTCGTTGATCAAAGTTGCTCGAGCCGCATTGTCCGTTGCCAGTTCAGAAACTATGGTGATTGAAGCACTGAAAGATCTCTTGAATATCTGCAAGAGAAATCAACAAAATAAGGCTCTGATTTGCAAGATTGGAATACTGCCCTTGCTCAGTAAATTCATGGAATACAAAGACAAGGAGATCAGATATTTGGTTCTGCAATTGTTATATCGTTTGGCAGAAAACGATGAACACAACACGGAAATCATAGAAAAAACATTTGATATTTCGTCGATAATCAACATGCTATCAAGCAGTCACCAAAACATCAAGAACGCATCACTACGGTTATTACTCGAACTTTCAAAAGCTGTGTCGATGTGCGAAAAAATTGGATCGATAACGGGAGGAATTCTTAGCCTTCTCACAATGAAGTATAGTCAGTCAACTGATACCTCTATTTCAGGAAAAGTAGATCAAATTTTGAAGAATCTCGAGAGCTACCCGCCGAACATCAGGTGCATGGCAGAATATGGCCACTTAGAACCTCTCTTGACCCACCTTGCTCAAGGTACTGAGGAGACTAAAATAGAAATGGCAAGCTACCTTGGGTATATGGTTCTTGGAGACGGCAATCAAACTGACGTGGCAAAGAAAGCGGCTCCGACTTTAGTCAGCATGGTGAAAAGTGGAAATGCAGTAAGCAGAAAGGCAGGATTCAAGGCTTTAATACAGATTTCATCTTACCAATCTAATGGAAAAATACTAGCTGAATCTGGAACAATACAAGCCATGGCTGAAGAGCTATTCAATCAGACAATCTCTGATGAGCCAATGAACTCAAAAGTGGAAGCAGCTGTGATTCTTGCAAATATACTCGAATCGGCAATTGAGCTTGAGAATTGGCAAGTTGATACTCATGGCAACACTTTAAATTCAGATTATGTGGCGTCTAACATAATATACTTGCTGAGGAACTCGGCTCCGGATGAACTCAAACTTAGCCTCGTCAGAATTCTTTTGTGTCTGAAAAAGTTGCCCAAGTTAATGGATGCCATTGTTTTTCGAGTGCAGGACAGTGAAGCTGGCTATACCATGATTGAATTCATCAATAACCTACATGAAGAACTTGGAATTGGAGCAATGAAGCTGCTCATTTCTCTCTGCCCTTTCATAGGCCATAGCTTAGCAGAAAGACTGTGCAAGATGAGGGGCCAACTGGAGAATCTAATTCAAAACCTCACTAGAGAATCGCAAATAAGCGAAAAGCAGGCACTTTCTGCAAAATTTCTTGCAACACTTCCCCACCAGAACTTGACTCTAAATCTTGCTCTTGTGGAGAAGAACGTAGTCCCTATAATCCTGCAAACGATCAATCAAATCCAAAGAAGTGAAACAAGAACAAGTAGGTATTCCGGTGCTTACTTAGAGGGATTAGTTGGGGTTATAGTCAGATTTACTACTACTTTATATGAACCCCAGATATTGTTTCTTGCAAGAACCCACAATTTCACGTCTTTTTTCACTGAATTGCTCATGAAAACATCGAGCGAAGAAGTTCAAAAGTTATCTGCAATTGGATTAGGGAATCTCTCATCAGCCACAATCAGTCTACTAAAAGTGCCGGAATCGCCAACAATCAAGGGAAAGAAGCTGTCTTACTTGCAAAAAGCACTATCTTATGGGTCATCATCAAAAAGAAACAAAATGACGAGCAAAATACCTGTTTGTCCAGTTCATAGAGGCGCCTGCTCGTCGCAGAATACGTTCTGCTTGATTGACGCAAATGCAGTAGAGAGATTGTTGGATTCTCTAGACAATGAGAATGAAGAAGTGATCGAAGCTTCTCTGTCAGCACTTTGTACCTTGTTGGACGAAAAAGTGGATGTTTTTGAGAGTGTGAATATGTTATGCAGTTATAATGCTATGAAACATGTACTTAATGTGATAAAAGAACACAAGCAAGAAGCTTTACGGCAGAAATCTCTCTGGGTAATAGAGAGATTTCTGTTGAAAGGTGGAGATAAGTCTGCTTCAGACATTTCGCAGGACAGATTGTTTCCTACTACATTGATTAGTGTTTTTCATCATGGAGATGATCATACAAGGGAAATGGCTGAGAGGATAATGAGACTTATGAACATGATGCCCAAGTTCTCTGTCACAGATTAA 3039 40.28 MSLENKESIRYLVSSSLVSISEFLTLIECAEKEKDVFMEIGCFFYRTSPAMKEFQKNENPPENAEEILKSLLKSINSAKDIMEKFQQDMINPVSNHQPISELEEVIKQMGEYLRSVPSSTFGDEEYAKIAVRSLADEMQNIQFEIGESRASPTKITDKEIPPKDQSGEEVDTDLYPVQIERSKDNQEALDPVESIGRRKKSRKTNRLSKLQPEKGRFMEPLYETFFCPLTEEIMDDPVTVQSGVTYEKQAILEWFEQFADSEEIICPITKKKLESKSFTPNKAIKSTINQWTERNEESLIKVARAALSVASSETMVIEALKDLLNICKRNQQNKALICKIGILPLLSKFMEYKDKEIRYLVLQLLYRLAENDEHNTEIIEKTFDISSIINMLSSSHQNIKNASLRLLLELSKAVSMCEKIGSITGGILSLLTMKYSQSTDTSISGKVDQILKNLESYPPNIRCMAEYGHLEPLLTHLAQGTEETKIEMASYLGYMVLGDGNQTDVAKKAAPTLVSMVKSGNAVSRKAGFKALIQISSYQSNGKILAESGTIQAMAEELFNQTISDEPMNSKVEAAVILANILESAIELENWQVDTHGNTLNSDYVASNIIYLLRNSAPDELKLSLVRILLCLKKLPKLMDAIVFRVQDSEAGYTMIEFINNLHEELGIGAMKLLISLCPFIGHSLAERLCKMRGQLENLIQNLTRESQISEKQALSAKFLATLPHQNLTLNLALVEKNVVPIILQTINQIQRSETRTSRYSGAYLEGLVGVIVRFTTTLYEPQILFLARTHNFTSFFTELLMKTSSEEVQKLSAIGLGNLSSATISLLKVPESPTIKGKKLSYLQKALSYGSSSKRNKMTSKIPVCPVHRGACSSQNTFCLIDANAVERLLDSLDNENEEVIEASLSALCTLLDEKVDVFESVNMLCSYNAMKHVLNVIKEHKQEALRQKSLWVIERFLLKGGDKSASDISQDRLFPTTLISVFHHGDDHTREMAERIMRLMNMMPKFSVTD 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11897568 11901156 - Bda007654.1 Bda11g01163 16271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01163 1012 SUPERFAMILY RING/U-box 209 299 - -
Bda11g01163 1012 MobiDBLite consensus disorder prediction 154 198 - -
Bda11g01163 1012 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1010 - -
Bda11g01163 1012 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 11 1010 - -
Bda11g01163 1012 Gene3D - 771 1002 IPR011989 -
Bda11g01163 1012 SMART Ubox_2 224 291 IPR003613 GO:0004842|GO:0016567
Bda11g01163 1012 Coils Coil 68 88 - -
Bda11g01163 1012 Pfam Armadillo/beta-catenin-like repeat 874 912 IPR000225 GO:0005515
Bda11g01163 1012 Gene3D - 306 499 IPR011989 -
Bda11g01163 1012 Gene3D - 500 678 IPR011989 -
Bda11g01163 1012 Coils Coil 686 713 - -
Bda11g01163 1012 Pfam U-box domain 223 296 IPR003613 GO:0004842|GO:0016567
Bda11g01163 1012 Coils Coil 884 904 - -
Bda11g01163 1012 SMART arm_5 781 822 IPR000225 GO:0005515
Bda11g01163 1012 SMART arm_5 874 914 IPR000225 GO:0005515
Bda11g01163 1012 SMART arm_5 330 370 IPR000225 GO:0005515
Bda11g01163 1012 SMART arm_5 371 412 IPR000225 GO:0005515
Bda11g01163 1012 SMART arm_5 457 497 IPR000225 GO:0005515
Bda11g01163 1012 SUPERFAMILY ARM repeat 457 999 IPR016024 -
Bda11g01163 1012 ProSiteProfiles U-box domain profile. 220 298 IPR003613 GO:0004842|GO:0016567
Bda11g01163 1012 SUPERFAMILY ARM repeat 310 631 IPR016024 -
Bda11g01163 1012 MobiDBLite consensus disorder prediction 154 210 - -
Bda11g01163 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 305 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01163 - - - qsu:112034274 1106.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00977 Bda-Chr11:9508778 Bda11g01163 Bda-Chr11:11897568 2.29E-152 dispersed
Bda11g01163 Bda-Chr11:11897568 Bda13g00397 Bda-Chr13:4944995 9.42E-07 dispersed
Bda11g01163 Bda-Chr11:11897568 Bda02g00859 Bda-Chr2:49047415 5.78E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01163 Bda_Chr11 FPKM 103.253273 117.325157 94.016342 93.406502 111.0373 144.132919 103.426826 196.55481 208.600632