Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01164 ATGGGTTCTGCAACTTCTTCAATGGCAGCAAAGTTTGCGTTTTTTCCCCCAGACCCACCAGCCTACGCCATTATCGCAGAAGAAACCTCGGGTAAGATGATGATTTCAAACGTGAATCAGAGAGAAAACGTCGACGTATTACGACTGAGCACCAAGAGAGGGAATGAGATTGTAGCCATGTTCGTGAGGAATCCATCAGCTTCATTGACTGTACTTTATTCCCATGGAAATGCAGCTGATCTTGGTCAAATTTATCACCTTTTCACTCAACTTAGTCTCCATCTCAATGTCAATCTGATGGGGTATGATTATTCTGGGTATGGACAGTCTTCTGGAAAGCCAAGTGAGCAGGACACATATGCAGACATAGAAGCTGCATTTAGATGCCTAGAAGAGAAATATGGTGTGAAGGAAGAAGACATTGTATTGTATGGACAATCGGTTGGAAGTGGACCAACATTGGAAATGGCGACTCGATTGCCTAGTTTGAGAGCTGTTGTTCTTCACAGTCCGATTCTGTCTGGGCTTCGTGTCATGTCATCTGTGAAGAGAACATTCTGGTTTGACATTTACAAGAATATCGATAAAATTCAACTGGTTGATTGCCCCGTTCTCGTAATTCATAAATTGGTCTCATGGTTTAGCAAGAAGCAAAACTCTATTTCTCTGTCTACTGCTGAGGTAGAGTATATTGCAGTAGGTAGTAGTTGTACTCAGATTCTTTGGATGAAGCAAATGCTCAAAGACTACGGTATTCCATAG 762 42.13 MGSATSSMAAKFAFFPPDPPAYAIIAEETSGKMMISNVNQRENVDVLRLSTKRGNEIVAMFVRNPSASLTVLYSHGNAADLGQIYHLFTQLSLHLNVNLMGYDYSGYGQSSGKPSEQDTYADIEAAFRCLEEKYGVKEEDIVLYGQSVGSGPTLEMATRLPSLRAVVLHSPILSGLRVMSSVKRTFWFDIYKNIDKIQLVDCPVLVIHKLVSWFSKKQNSISLSTAEVEYIAVGSSCTQILWMKQMLKDYGIP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11937713 11946338 - Bda007656.1 Bda11g01164 16272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01164 253 CDD RNase_HI_RT_Ty1 210 253 - -
Bda11g01164 253 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 209 - -
Bda11g01164 253 Gene3D alpha/beta hydrolase 31 229 IPR029058 -
Bda11g01164 253 SUPERFAMILY alpha/beta-Hydrolases 44 208 IPR029058 -
Bda11g01164 253 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 209 - -
Bda11g01164 253 Pfam Serine aminopeptidase, S33 69 185 IPR022742 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01164 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - tcc:18610158 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01164 Bda-Chr11:11937713 Bda12g00479 Bda-Chr12:6364657 8.52E-113 dispersed
Bda01g01191 Bda-Chr1:47194388 Bda11g01164 Bda-Chr11:11937713 9.04E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1004 . . . Bda11g01164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0516 . . . . . . . Bda11g01164 . . . . . Cmo04g02953 . . . . Car15g00221 Cpe13g00994 . . . . . . . . . . . . . . . . . Chy09g00382 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01164 Bda_Chr11 FPKM 29.564945 31.327503 50.008835 48.222179 36.869019 35.795864 36.605091 67.197464 66.582123