Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01166 ATGGCGGAAGCTTCAGTTAAGCCGACACCCCTTTTGAAAGATGAGCTGGACATCGTAATCCCCACGATTAGAAACCTGGATTTCTTAGAGATGTGGAGGCCCTTTTTTCAACCGTATCATCTCATAATCGTACAGGATGGTGACCCTTCGAAGATTATCAAGGTCCCAGATGGCTTCGACTTTGAGCTCTACAATCGAAACGACATCAATCGGATTTTGGGTCCGAAGGCATCTTGCATTTCGTTCAAAGACTCTGCTTGTCGCTGCTTTGGATATATGATTTCTAAGAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTTGCCAAAGATCCAACTGGGAAAGATATCAATGCACTTGGGCAGCACATAAAGAATCTCTTATGCCCATCTACTCCGTTTTTCTTCAACACTCTTTACGATCCGTATCGGGAGGGTGCGGACTTTGTCCGCGGATATCCTTTCAGTCTTCGAGAGGGTATTCCAACTGCCGTTTCTCACGGACTCTGGCTGAACGTTATCTGCGACCATCTCGGGTTGGGGGTGAAGACCGGTTTGCCATACATATGGCACAGCAAAGCAAGCAATCCATTTGTGAACCTTAAGAAGGAGTATAAAGGAATCTTCTGGCAAGAAGAAATCATCCCCTTCTTTCAGTCTGCAATCCTTCCGAAAGACTGCACTACAGTTCAGAAATGCTATATCGAGCTCTCAAAGCTGGTGAAGGAGAAGCTCGAAAAGCTCGATCCTTACTTTGGCAAGCTTGCAGACGCCATGGTTACTTGGATCGAAGCTTGGGATGAGCTCAATAACAGCTCTTCTACCCAGAAATCTGCAAAACTACTCCCTGCCAAGTAG 861 45.53 MAEASVKPTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPDGFDFELYNRNDINRILGPKASCISFKDSACRCFGYMISKKKYIYTIDDDCFVAKDPTGKDINALGQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGIPTAVSHGLWLNVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSAILPKDCTTVQKCYIELSKLVKEKLEKLDPYFGKLADAMVTWIEAWDELNNSSSTQKSAKLLPAK 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11989802 11992425 + Bda007659.1 Bda11g01166 16274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01166 286 PANTHER UDP-ARABINOSE MUTASE 173 278 IPR037595 -
Bda11g01166 286 Pfam Reversibly glycosylated polypeptide 12 174 IPR037595 -
Bda11g01166 286 PANTHER UDP-ARABINOPYRANOSE MUTASE 2-RELATED 1 174 - -
Bda11g01166 286 PANTHER UDP-ARABINOPYRANOSE MUTASE 2-RELATED 173 278 - -
Bda11g01166 286 PANTHER UDP-ARABINOSE MUTASE 1 174 IPR037595 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01166 K13379 RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] - rcu:8265060 349.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01166 Bda-Chr11:11989802 Bda14g00889 Bda-Chr14:6894026 1.59E-159 dispersed
Bda01g01198 Bda-Chr1:47245121 Bda11g01166 Bda-Chr11:11989802 2.23E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g14 Blo01g00460 . . Bda11g01166 Bpe13g01365 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01166 . Bpe02g02309 Bma01g00129 . . . . . . . . . Cpe07g00091 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0032157 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01166 Bda_Chr11 FPKM 58.990089 60.714321 62.005093 60.985382 84.888512 96.884277 91.995705 50.942871 60.474045