Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01167 GTTATGAACTCAGAGGAGAAGGCTACAATGGAGATCGTTCAACCTTCTGAACATCTCTGCTATGTCCGATGCAACTTCTGCAACACTATTCTTGCGGTTGGGATTCCATGCAAACGTTTGCTGGATACAGTGACAGTGAAGTGCGGCCATTGCAGCAACCTTTCTTTTCTGAGCACTAGACCTCCATTACAAGGCCAATGCTTTGATCATCCATTGTCTCTTCAGACGCAGGTAATTTGCAAAGGCCAGCCTTCATCATCGCCCTCTTCCTCCTCCAGTGAGCCATTATCACCCAAAGCTCCATTTGTGGTCAAACCTCCTGAGAAGAAGCACAGAATTCCATCTGCATACAATCGTTTCATGAAAGAGGAAATACAGCGTCTAAAGGCAGCCAACCCTGAAATACCTCATCGAGAAGCATTCAGCAAAGCAGCAAAAAGTTGGGCGAGGTACATTCCAAACGCACCAGGAGGATCAAGCTCTGCTGGAATGAGCAACAATGTAAGTTAA 510 46.27 VMNSEEKATMEIVQPSEHLCYVRCNFCNTILAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCFDHPLSLQTQVICKGQPSSSPSSSSSEPLSPKAPFVVKPPEKKHRIPSAYNRFMKEEIQRLKAANPEIPHREAFSKAAKSWARYIPNAPGGSSSAGMSNNVS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11996252 11997724 + Bda007660.1 Bda11g01167 16275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01167 169 Pfam YABBY protein 15 151 IPR006780 GO:0007275
Bda11g01167 169 PANTHER PROTEIN CRABS CLAW 8 162 - -
Bda11g01167 169 PANTHER PROTEIN YABBY 6-RELATED 8 162 IPR006780 GO:0007275
Bda11g01167 169 MobiDBLite consensus disorder prediction 80 97 - -
Bda11g01167 169 MobiDBLite consensus disorder prediction 80 109 - -
Bda11g01167 169 Gene3D High mobility group box domain 92 154 IPR036910 -
Bda11g01167 169 SUPERFAMILY HMG-box 95 149 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01167 K25796 YAB; plant-specific transcription factor YABBY family protein - vvi:100261225 278.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00056 Bda-Chr11:675973 Bda11g01167 Bda-Chr11:11996252 9.48E-33 dispersed
Bda11g01167 Bda-Chr11:11996252 Bda01g01948 Bda-Chr1:55878994 2.08E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01167 . 2 163 C2C2-YABBY Transcription Factor Family AT1G69180 54.9 4.8e-44 174.5
Bda07g00010 CCT 61 211 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 2.9e-40 161.8
Bda08g00564 BCT,CCT 64 219 C2C2-YABBY Transcription Factor Family AT2G45190 54.2 2.9e-40 161.8
Bda09g01385 . 103 278 C2C2-YABBY Transcription Factor Family AT1G08465 65.4 5.0e-57 217.6
Bda02g00672 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 61.1 5.5e-56 214.2
Bda08g00564 BCT,CCT 21 193 C2C2-YABBY Transcription Factor Family AT1G08465 57.2 5.7e-45 177.6
Bda07g00010 CCT 18 188 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 9.1e-43 170.2
Bda06g00039 BCT,CCT 19 183 C2C2-YABBY Transcription Factor Family AT1G08465 55.8 2.9e-41 165.2
Bda07g00010 CCT 28 210 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 1.2e-46 183.3
Bda08g00564 BCT,CCT 31 217 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 8.5e-45 177.2
Bda06g00039 BCT,CCT 29 194 C2C2-YABBY Transcription Factor Family AT4G00180 52.2 5.3e-39 157.9
Bda01g01948 BCT 7 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 1.1e-63 239.6
Bda11g00056 BCT 10 171 C2C2-YABBY Transcription Factor Family AT2G26580 64.2 1.1e-50 196.4
Bda02g00672 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 1.5e-49 192.6
Bda09g01385 . 103 267 C2C2-YABBY Transcription Factor Family AT2G26580 58.2 4.3e-44 174.5
Bda08g00564 BCT,CCT 21 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.7 9.6e-44 173.3
Bda07g00010 CCT 18 176 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.5e-41 164.5
Bda06g00039 BCT,CCT 19 189 C2C2-YABBY Transcription Factor Family AT2G26580 50.6 1.3e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16668 PF04690 YABBY 4.80E-47 CL0114 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01167 Bda_Chr11 FPKM 4.168175 4.62501 6.748353 6.63818 6.779257 6.667722 7.493138 9.15734 9.805782