Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01167 GTTATGAACTCAGAGGAGAAGGCTACAATGGAGATCGTTCAACCTTCTGAACATCTCTGCTATGTCCGATGCAACTTCTGCAACACTATTCTTGCGGTTGGGATTCCATGCAAACGTTTGCTGGATACAGTGACAGTGAAGTGCGGCCATTGCAGCAACCTTTCTTTTCTGAGCACTAGACCTCCATTACAAGGCCAATGCTTTGATCATCCATTGTCTCTTCAGACGCAGGTAATTTGCAAAGGCCAGCCTTCATCATCGCCCTCTTCCTCCTCCAGTGAGCCATTATCACCCAAAGCTCCATTTGTGGTCAAACCTCCTGAGAAGAAGCACAGAATTCCATCTGCATACAATCGTTTCATGAAAGAGGAAATACAGCGTCTAAAGGCAGCCAACCCTGAAATACCTCATCGAGAAGCATTCAGCAAAGCAGCAAAAAGTTGGGCGAGGTACATTCCAAACGCACCAGGAGGATCAAGCTCTGCTGGAATGAGCAACAATGTAAGTTAA 510 46.27 VMNSEEKATMEIVQPSEHLCYVRCNFCNTILAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCFDHPLSLQTQVICKGQPSSSPSSSSSEPLSPKAPFVVKPPEKKHRIPSAYNRFMKEEIQRLKAANPEIPHREAFSKAAKSWARYIPNAPGGSSSAGMSNNVS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11996252 11997724 + Bda007660.1 Bda11g01167 16275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01167 169 Pfam YABBY protein 15 151 IPR006780 GO:0007275
Bda11g01167 169 PANTHER PROTEIN CRABS CLAW 8 162 - -
Bda11g01167 169 PANTHER PROTEIN YABBY 6-RELATED 8 162 IPR006780 GO:0007275
Bda11g01167 169 MobiDBLite consensus disorder prediction 80 97 - -
Bda11g01167 169 MobiDBLite consensus disorder prediction 80 109 - -
Bda11g01167 169 Gene3D High mobility group box domain 92 154 IPR036910 -
Bda11g01167 169 SUPERFAMILY HMG-box 95 149 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00056 Bda-Chr11:675973 Bda11g01167 Bda-Chr11:11996252 9.48E-33 dispersed
Bda11g01167 Bda-Chr11:11996252 Bda01g01948 Bda-Chr1:55878994 2.08E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16668 PF04690 YABBY 4.80E-47 CL0114 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01167 K25796 - vvi:100261225 278.1