Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g01170 | ATGGGGAGAGGTAGGGTTCAGCTGAAAAGAATAGAAAATAAAATCAATCGGCAAGTTACTTTTTCAAAAAGGAAAGCTGGGTTGTTGAAGAAAGCTCATGAAATCTCCGTACTTTGCGACGCTGAGGTTGCTTTGATCGTCTTCTCTAACAAAGGAAAGCTCTTTGAATACGCTACAGATTCTAGCATGGAGATGATACTGGAACGATATGAGAGATATTCCTGTGCAGAGAGGCAGCTATATGCAACTCAATCTGAGTCACAGGGGAACTGGGTCATTGAGTATTCAAGACTAAAAGCTAAGATTGAGCTTTTAGAGAGAAAATACAGGCACTATCTGGGTGAAGATCTTAACTCGTTGAGTCTGAAAGAGCTTCAGAATTTGGAGCAACAGCTTGAGACTGCTCTTAAACATATTCGATCAAAAAAAGTAGGGTTAATTAAACAATTAGCGTTCTAA | 459 | 39.43 | MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSNKGKLFEYATDSSMEMILERYERYSCAERQLYATQSESQGNWVIEYSRLKAKIELLERKYRHYLGEDLNSLSLKELQNLEQQLETALKHIRSKKVGLIKQLAF | 152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12050423 | 12055336 | + | Bda007665.1 | Bda11g01170 | 16278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g01170 | 152 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 147 | - | - | |
Bda11g01170 | 152 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda11g01170 | 152 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda11g01170 | 152 | ProSiteProfiles | K-box domain profile. | 88 | 152 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda11g01170 | 152 | CDD | MADS_MEF2_like | 2 | 74 | IPR033896 | GO:0000977|GO:0045944 | |
Bda11g01170 | 152 | PANTHER | TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A | 1 | 147 | - | - | |
Bda11g01170 | 152 | Pfam | K-box region | 84 | 148 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda11g01170 | 152 | Coils | Coil | 95 | 115 | - | - | |
Bda11g01170 | 152 | Coils | Coil | 118 | 142 | - | - | |
Bda11g01170 | 152 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Bda11g01170 | 152 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda11g01170 | 152 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677|GO:0046983 | |
Bda11g01170 | 152 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda11g01170 | 152 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda11g01170 | 152 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda11g01170 | 152 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g02119 | Bda-Chr1:57227731 | Bda11g01170 | Bda-Chr11:12050423 | 5.40E-96 | dispersed | |
Bda11g01170 | Bda-Chr11:12050423 | Bda14g00891 | Bda-Chr14:6915385 | 4.30E-60 | dispersed | |
Bda11g01170 | Bda-Chr11:12050423 | Bda10g01107 | Bda-Chr10:45092866 | 1.76E-76 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16669 | PF01486 | K-box | 3.50E-21 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g01170 | K09264 | - | qsu:112022353 | 228.409 |