Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01170 ATGGGGAGAGGTAGGGTTCAGCTGAAAAGAATAGAAAATAAAATCAATCGGCAAGTTACTTTTTCAAAAAGGAAAGCTGGGTTGTTGAAGAAAGCTCATGAAATCTCCGTACTTTGCGACGCTGAGGTTGCTTTGATCGTCTTCTCTAACAAAGGAAAGCTCTTTGAATACGCTACAGATTCTAGCATGGAGATGATACTGGAACGATATGAGAGATATTCCTGTGCAGAGAGGCAGCTATATGCAACTCAATCTGAGTCACAGGGGAACTGGGTCATTGAGTATTCAAGACTAAAAGCTAAGATTGAGCTTTTAGAGAGAAAATACAGGCACTATCTGGGTGAAGATCTTAACTCGTTGAGTCTGAAAGAGCTTCAGAATTTGGAGCAACAGCTTGAGACTGCTCTTAAACATATTCGATCAAAAAAAGTAGGGTTAATTAAACAATTAGCGTTCTAA 459 39.43 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSNKGKLFEYATDSSMEMILERYERYSCAERQLYATQSESQGNWVIEYSRLKAKIELLERKYRHYLGEDLNSLSLKELQNLEQQLETALKHIRSKKVGLIKQLAF 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12050423 12055336 + Bda007665.1 Bda11g01170 16278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01170 152 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 147 - -
Bda11g01170 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda11g01170 152 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda11g01170 152 ProSiteProfiles K-box domain profile. 88 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda11g01170 152 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bda11g01170 152 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 147 - -
Bda11g01170 152 Pfam K-box region 84 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda11g01170 152 Coils Coil 95 115 - -
Bda11g01170 152 Coils Coil 118 142 - -
Bda11g01170 152 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bda11g01170 152 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda11g01170 152 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bda11g01170 152 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda11g01170 152 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda11g01170 152 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda11g01170 152 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02119 Bda-Chr1:57227731 Bda11g01170 Bda-Chr11:12050423 5.40E-96 dispersed
Bda11g01170 Bda-Chr11:12050423 Bda14g00891 Bda-Chr14:6915385 4.30E-60 dispersed
Bda11g01170 Bda-Chr11:12050423 Bda10g01107 Bda-Chr10:45092866 1.76E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16669 PF01486 K-box 3.50E-21 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01170 K09264 - qsu:112022353 228.409