Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01171 ATGAGAACTGGGAAATCCAATCGGGAAGAAGACGAGTTCGAGGAGGAAGAGTTCATTTCCAAAAAAGAAGGCCCTTCTTCGACTTCTATTGCCAACATTAATAGCGACAGCAAAGAGGCCAAGAACAACGATAAAGCTAATGTAATCCGGTCAAAGCATTCTGTTACAGAGCAACGAAGAAGAAGCAAGATCAATGAGAGGTTCCAAATGTTGAGAGATCTCATACCTCATAGTGATCAAAAGAGGGATACAGCATCTTTCCTACTCGAATTAACTACTAAAATTCATTTGCAGGTGATTGAGTATGTTCGATATTTACAAGAAAAAGTGCAAAAATACGAAGGTTCGTGTCAGAGCTGGAGCGGGGAGCCTACCAAATTAATGCCATGGAGAAATAGTCATTGGCGGGCCCAAAGTTTTTGCAGTTCGGTTCCGGGATTAACTTTTCTAGGTAAATTTGATGAAACCCAAAACTTGGAGGATTCACTTGCAAATAGGGACCTTGTTCGACAAGGTGATGGAGCAAATATAGGGACCTCTTTGCAGGTTAGCATTCCGTCTTCTGTGCGAAGCGATGGCACTCTTGCTCGTCCTCTTCAAGCTCCGGGTTCTAATGTGCACTCAACTGAGTGTCTCGACCAGTCCGAGACTTTAAACCAGCCCGAGGAGGCGACTATCGAAGGCGGAACTATCAGTATCTCAAGTCTTTACTCAGAAGGCTTATTGAACACTTTGACACAAGCACTCAAGGGTGCCGGAGTGGATCTGTCTCAGGCGAGTATCTCTATTCAGATAGACATCGGAAAAAGAGCAGCCGGAACATCGGCCTTGAAGGATCACGAGAGTAATAAAGAAACGATACATACGAAGGACAGAGGCAGTGCCGAGGACTCGAATCAAGCCGTAAAAAGGTTAAAAACGTAA 924 44.37 MRTGKSNREEDEFEEEEFISKKEGPSSTSIANINSDSKEAKNNDKANVIRSKHSVTEQRRRSKINERFQMLRDLIPHSDQKRDTASFLLELTTKIHLQVIEYVRYLQEKVQKYEGSCQSWSGEPTKLMPWRNSHWRAQSFCSSVPGLTFLGKFDETQNLEDSLANRDLVRQGDGANIGTSLQVSIPSSVRSDGTLARPLQAPGSNVHSTECLDQSETLNQPEEATIEGGTISISSLYSEGLLNTLTQALKGAGVDLSQASISIQIDIGKRAAGTSALKDHESNKETIHTKDRGSAEDSNQAVKRLKT 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12086396 12089159 - Bda007669.1 Bda11g01171 16279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01171 307 PANTHER TRANSCRIPTION FACTOR BIM2 1 307 - -
Bda11g01171 307 CDD bHLH_AtBIM_like 47 131 - -
Bda11g01171 307 MobiDBLite consensus disorder prediction 1 62 - -
Bda11g01171 307 Pfam Helix-loop-helix DNA-binding domain 50 88 IPR011598 GO:0046983
Bda11g01171 307 MobiDBLite consensus disorder prediction 23 37 - -
Bda11g01171 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Bda11g01171 307 MobiDBLite consensus disorder prediction 275 307 - -
Bda11g01171 307 Gene3D - 47 126 IPR036638 GO:0046983
Bda11g01171 307 MobiDBLite consensus disorder prediction 38 62 - -
Bda11g01171 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 128 IPR036638 GO:0046983
Bda11g01171 307 SMART finulus 54 112 IPR011598 GO:0046983
Bda11g01171 307 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 307 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01171 - - - jre:108983600 333.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02116 Bda-Chr1:57209703 Bda11g01171 Bda-Chr11:12086396 9.70E-81 dispersed
Bda11g01171 Bda-Chr11:12086396 Bda15g00637 Bda-Chr15:9509280 5.59E-45 dispersed
Bda11g01171 Bda-Chr11:12086396 Bda06g00506 Bda-Chr6:7174677 1.57E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g991 . Blo16g01081 . Bda11g01171 Bpe13g01369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0519 . . . . . . . Bda11g01171 . . . . . . . . . . . . Cpe07g00099 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004929 2 2 2 1 2 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 0 2 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16670 PF00010 HLH 1.40E-08 No_clan Bda TF