Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01176 ATGGAATCAAACCAAGGTGTGGTTCTACCTTCACAGTTTCCGGAACATAATTGTATGAATAACATGGGAATGTCGAATGTAGGAGGATATGAAAATCAACGGCCTGATCTACCAGCTCTTAAGAAGCGAGGTCATGGATGCCGTTCTTGGATAAAAATTGATCAGGATGGAAACTCAAAAATATTGGAACTTGATAAGGCCACAATAATGAGACATTGCTCCCTACCTTCTAGAGATCTTCGACTTTTGGATCCTATGTTCATTTATCCTTCTACGATACTGGGACGAGAGAAGGCGATTGTGGTCAGTCTTGAACAGATCAGATGTATAATCACTTCAAATGAAGTTGTTTTAATGAACTCCTTAGATGGGTGTGTTGTACAGTACAGGTCGGAGTTGTCCAATCGCCTCCAGACTTCTAAATACGAATCAGGTGAACAACCATATGGTTTACCCTTTGAGTTTAAAGCCCTGGAGCTGGCTTTGGAGCTCACTTGCATGTCTCTAGATGCTCAGGTGAAGGAACTGGAAATGGAGATATATCCTGGCCTGGATGAACTTGCATTATCCATTAACACCCTTAACCTAGAACGGGTCCGAAGATTTAAAGGCCATCTCCTTGGATTGACCCAGCGTGTTCAAAAGGTTCGTGATGAAATTGAACATCTCATGAATGATGATGGTGATATGGCTGAGATGTATTTGACTGAGAAAAAAGAAAGGTTAGAGGGCTATACCCTAAATGACCTTCCTGTTCAAACAAAGCGCAGATCAAAGTTGCTATCCAAATCTGCTCCAGTCTCGCCAGTTGGATCAATTAATCGAACCCAGAAACTGGAAAGGACATTTAGTGGTGTTGTTAGTTCAAGCAGACATGGAAGCTCGATAAGTTTATCCAGCAATGGAGAAAACATTGATCAACTGGAAATGCTACTTGAAGCCTACTTTGTTGGCATAGACAACACCCTCAACAAGTTATTATCGCTCAAGGAATGTATTGATGATACTGAAGATTTAATCAACATTAAACTGGATAATGTTCAGAACCACCTGATAAAATTTCAGCTACTTCTCACAGCAGCTACTTTCATGGCTACAATCTTTGCTACGGTTACCGCAATTTTCGGTATGAATTTCTCTGCTCAAATCTTCGATTCTCCAACTGCATTCAACTGGGTTTTAGCTGTAACTAGTGGCTTTTGTGGATTATTTTTCTTATCTTTCCAGATTTATTTTAGACATAAGAAATCTTTCCCATTGTAA 1263 40.06 MESNQGVVLPSQFPEHNCMNNMGMSNVGGYENQRPDLPALKKRGHGCRSWIKIDQDGNSKILELDKATIMRHCSLPSRDLRLLDPMFIYPSTILGREKAIVVSLEQIRCIITSNEVVLMNSLDGCVVQYRSELSNRLQTSKYESGEQPYGLPFEFKALELALELTCMSLDAQVKELEMEIYPGLDELALSINTLNLERVRRFKGHLLGLTQRVQKVRDEIEHLMNDDGDMAEMYLTEKKERLEGYTLNDLPVQTKRRSKLLSKSAPVSPVGSINRTQKLERTFSGVVSSSRHGSSISLSSNGENIDQLEMLLEAYFVGIDNTLNKLLSLKECIDDTEDLINIKLDNVQNHLIKFQLLLTAATFMATIFATVTAIFGMNFSAQIFDSPTAFNWVLAVTSGFCGLFFLSFQIYFRHKKSFPL 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12156585 12159249 + Bda007675.1 Bda11g01176 16284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01176 420 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 420 IPR039204 -
Bda11g01176 420 Coils Coil 206 226 - -
Bda11g01176 420 PANTHER MAGNESIUM TRANSPORTER MRS2-5 3 420 - -
Bda11g01176 420 CDD Mrs2_Mfm1p-like 50 416 IPR039204 -
Bda11g01176 420 Gene3D Magnesium transport protein CorA, transmembrane region 125 351 - -
Bda11g01176 420 Gene3D - 38 121 - -
Bda11g01176 420 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 356 408 IPR045863 -
Bda11g01176 420 Gene3D Magnesium transport protein CorA, transmembrane region 358 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01176 K16075 MRS2, MFM1; magnesium transporter - rcu:8264709 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00496 Bda-Chr5:51751997 Bda11g01176 Bda-Chr11:12156585 3.20E-140 dispersed
Bda08g00266 Bda-Chr8:2739618 Bda11g01176 Bda-Chr11:12156585 4.34E-75 dispersed
Bda09g00228 Bda-Chr9:3077204 Bda11g01176 Bda-Chr11:12156585 2.27E-10 dispersed
Bda11g01176 Bda-Chr11:12156585 Bda12g00562 Bda-Chr12:9654647 4.10E-158 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g36 . Blo16g01085 . Bda11g01176 Bpe13g01373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0537 . . . . . . . Bda11g01176 . . . Bma06g00739 . . . . . . . . Cpe07g00089 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00562 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.8e-198 688.7
Bda05g00496 . 1 442 MRS2 Gene Family AT1G16010 76.7 4.1e-182 634.4
Bda11g01176 . 36 420 MRS2 Gene Family AT1G16010 57.0 1.9e-115 412.9
Bda08g00266 . 6 415 MRS2 Gene Family AT5G64560 71.0 3.5e-150 528.1
Bda06g01175 . 15 502 MRS2 Gene Family AT3G19640 61.8 6.1e-147 517.7
Bda06g01174 . 15 502 MRS2 Gene Family AT3G19640 62.1 7.5e-145 510.8
Bda06g01157 . 39 501 MRS2 Gene Family AT3G19640 64.5 7.5e-145 510.8
Bda06g01165 . 39 499 MRS2 Gene Family AT3G19640 64.6 1.1e-143 506.9
Bda11g01176 . 11 420 MRS2 Gene Family AT2G03620 64.3 7.5e-133 470.7
Bda12g00562 . 9 443 MRS2 Gene Family AT2G03620 52.5 8.0e-111 397.5
Bda05g00496 . 6 442 MRS2 Gene Family AT2G03620 50.3 1.7e-105 379.8
Bda08g00266 . 6 357 MRS2 Gene Family AT5G09690 68.0 1.2e-119 426.4
Bda12g00562 . 50 379 MRS2 Gene Family AT5G09690 51.7 3.2e-75 278.9
Bda08g00266 . 26 293 MRS2 Gene Family AT5G09720 67.6 1.1e-90 330.1
Bda12g00562 . 1 443 MRS2 Gene Family AT1G80900 82.4 7.7e-197 683.3
Bda05g00496 . 1 442 MRS2 Gene Family AT1G80900 75.8 1.5e-179 625.9
Bda11g01176 . 36 420 MRS2 Gene Family AT1G80900 56.6 7.4e-115 411.0
Bda09g00228 . 41 441 MRS2 Gene Family AT5G22830 70.7 5.1e-151 531.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01176 Bda_Chr11 FPKM 8.886316 8.702728 15.083752 15.61345 14.99657 14.117338 15.036089 14.999798 15.764874