Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01177 ATGGGATCGAAAAATGTGCTCACAGATTTGGTGTTGGAAGAATGGAATGGTTCTTCTTCTACGAAGCTTTCTAGAACTGCCACCATAACTACCGCTCCTCACCTCACCATCGAAAGGCGAGTTATTACGATTTCATCCGGTCGCCGGTTTAATCACGTTTGGGGACGATTCTTGGATGCATTCGGCTTTCCTAGCAGTGTAACTCCGGATTATGTCCCTTTTCAAGTATGGGATTTGTTGCAGGGTCTCTCAACATACATAAGGACTATGCTTTCTACACAAGCTCTGTTAAGTGCCATTGGAGTTGGTGAGAAATCGGCTACTGTGATTGGTGCCACATTTCAGTGGTTTCTGAGGGATCTGACTGGAATGGTTGGAGGTATCTTATTCACATTCTATCAGGGATCAAATCTAGATAGTAATGCAAAAATGTGGCGTTTGGTTGCAGATCTTATGAATGATCTTGGGATGTTAATGGACCTACTCTCCCCATTATTTCCATCAGCATTCATACTCATTGTTTGCTTAGGCAGCCTGTCAAGATCATTCACTGGTGTTGCTAGTGGAGCTACCAGAGCTGCTTTAACACAGCATTTTGCCCTTCAGCATAACGCAGCAGATATATCTGCCAAGGAAGGAAGTCAAGAGACAGTAGCCACAATGATAGGAATGGCATTGGGTATGCTTCTTGCGCATGTTACAGTGGGACATCCGCTGGCTATTTGGTTCGCTTTTTTGTGTCTCACCATGTTTCATATGTATGCGAACTACAAGGCTGTGGGGTGCGTTGCTTTGACTTCGTTAAACCCAGAGAGAAGTTCAATTGCTTTACAGCATTTCATGGCGTCTGGTAAAGTTCTCTCTCCTGAAAAAGTCTCAAGGATGGAGCATGTATTACCAGGTTTTTCAGCAAAGCATTTGCTGGTGGAGAGGAAGGAAGTTGTCGGCATTATTATGCATAAAGATTCAACCTCTGCGGATGTCTTGCACGCTTTTATTCATGCACTTGTTATGGCAAATCTTCCTGATACAAGAAACTCCAAGCATTTGGAGAGCAGAACATGGATGGATAAAAACTATGAAGTTTTTATTGAAAAGAGGTTGACGCGTGCTGTGGACGATATGTTAGGTTTGACTGAACACCGCTACTGTCTCCGGCATATGTATGCAAACTTTAAAAGTCAATTTCGGGGCAGAGCGTACAGGGATGCAATGTTTCAAGCGGCCAGGGCACCCACAAGTTTTCATTTTGAAAAAGAAATGAGAAATCTTGACCAGATCAATTCAAAAGCTCACGCATGGCTTAGACGAACACCACCAAGCTACTGGGTCAGTCATGCATTTTCTCCAATCCCCAAATGTGACATGGGATTGAATAATCTATGCGAGTCATTCAATGCAGTTCTACTGCCGACCAGAGACAAACCTGATATTTCCCTGCATTCGCTAAGACAGGCCCCGGAAGATTTCGTCCATCCATACTATCTTCGGCAGACATACTTGGCGATGTACTCAAACTTCATTCATCCAATTAGTGGGCAAACCATGTGGCCGCCCGTCAAAAATGCAAAGAAGATCCTTCCGCCCAAGAGACGTCAACAACCTGGCAGGCCGAAGAAACATAAAGTGCGCGATGTGGATGAGTCGTCGAGGACGTCTGTTAGTAGGAGGAAATCGACTGTGGCGTTCAGCATATGTCGGCGTCAGGGGCATAATAGTCGCACCTGTCCTGATAGGGGATCTAATTCCGGCGCGGCTGGTGGTATTGCTTCGCAGGACACATTTATGGGTTTTCACACATAA 1803 44.98 MGSKNVLTDLVLEEWNGSSSTKLSRTATITTAPHLTIERRVITISSGRRFNHVWGRFLDAFGFPSSVTPDYVPFQVWDLLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMVGGILFTFYQGSNLDSNAKMWRLVADLMNDLGMLMDLLSPLFPSAFILIVCLGSLSRSFTGVASGATRAALTQHFALQHNAADISAKEGSQETVATMIGMALGMLLAHVTVGHPLAIWFAFLCLTMFHMYANYKAVGCVALTSLNPERSSIALQHFMASGKVLSPEKVSRMEHVLPGFSAKHLLVERKEVVGIIMHKDSTSADVLHAFIHALVMANLPDTRNSKHLESRTWMDKNYEVFIEKRLTRAVDDMLGLTEHRYCLRHMYANFKSQFRGRAYRDAMFQAARAPTSFHFEKEMRNLDQINSKAHAWLRRTPPSYWVSHAFSPIPKCDMGLNNLCESFNAVLLPTRDKPDISLHSLRQAPEDFVHPYYLRQTYLAMYSNFIHPISGQTMWPPVKNAKKILPPKRRQQPGRPKKHKVRDVDESSRTSVSRRKSTVAFSICRRQGHNSRTCPDRGSNSGAAGGIASQDTFMGFHT 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12166417 12178700 + Bda007676.2 Bda11g01177 16285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01177 600 Pfam Vitamin B6 photo-protection and homoeostasis 56 283 IPR006968 -
Bda11g01177 600 PANTHER RUS1 FAMILY PROTEIN C16ORF58 304 367 IPR006968 -
Bda11g01177 600 MobiDBLite consensus disorder prediction 555 589 - -
Bda11g01177 600 PANTHER PROTEIN ROOT UVB SENSITIVE 3 7 302 - -
Bda11g01177 600 MobiDBLite consensus disorder prediction 540 554 - -
Bda11g01177 600 MobiDBLite consensus disorder prediction 526 593 - -
Bda11g01177 600 PANTHER RUS1 FAMILY PROTEIN C16ORF58 7 302 IPR006968 -
Bda11g01177 600 PANTHER PROTEIN ROOT UVB SENSITIVE 3 304 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01177 - - - qsu:112036624 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00666 Bda-Chr1:33662911 Bda11g01177 Bda-Chr11:12166417 1.33E-66 dispersed
Bda03g01556 Bda-Chr3:54726373 Bda11g01177 Bda-Chr11:12166417 3.30E-09 dispersed
Bda03g01636 Bda-Chr3:55712017 Bda11g01177 Bda-Chr11:12166417 1.27E-39 dispersed
Bda06g00185 Bda-Chr6:2517519 Bda11g01177 Bda-Chr11:12166417 1.31E-30 dispersed
Bda10g00527 Bda-Chr10:38925839 Bda11g01177 Bda-Chr11:12166417 1.85E-30 dispersed
Bda11g01177 Bda-Chr11:12166417 Bda14g01221 Bda-Chr14:12307381 1.09E-19 dispersed
Bda14g01493 Bda-Chr14:22752284 Bda11g01177 Bda-Chr11:12166417 7.48E-11 dispersed
Bda11g01177 Bda-Chr11:12166417 Bda02g00839 Bda-Chr2:48939330 2.21E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g40 . Blo16g01086 . Bda11g01177 Bpe13g01375 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0907 . . . . . . . . . . Bda11g01177 . . . Bma06g00738 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008878 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01177 Bda_Chr11 FPKM 20.520597 22.422493 26.787062 28.352234 29.676197 27.507381 31.220087 35.161224 32.279259