Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01178 ATGGCTAATTCAGAGATTGGGAAATTGAGTACCAATTATTCTGTTCTGTTCTGTAATCAGGATTCGGTGGTCATTCCATCTTCATCAACCCTTAAGAGTAGCTTATCATTCCTGCACCAAGTTCCAGAGGGCCATGTTGGTGTTTATTGGAGAGGAGGAGCCCTTTTACAGACAATTAGTGATCCAGGTTTTCATTTCAAAATTCCTCTTATTACTCATTATGAACCTGTTCAAGTGACTCTTCAGACTGATCAGGTCAGGGATATTCCATGTGGTACCAAAGGAGGTGTAATGATCAACTTTGAAAAGATAGAGGTTGTTAATCGTCTTCGTAAAGAATATGTGTACGAGACCTTGCTCAACTATGGAGTGCAGTATGATCATACATGGATTTATGATAAGATTCACCATGAAATCAATCAGTTTTGTAGCTCTCATACTCTCCAACAAGTTTACATTGACGTATTTGATCAGATTGATGAAAAGATGAAAGATGCTCTTCAAGGTGACTGCACACGCTATGCACCAGGCATTGAAATAATCAGTGTTCGTGTGACAAAGCCTGCTATCCCGGAAACTATAAGAAAGAATTTTGAACAGATGGAAGTTGAACGGACCAAGGTCCTAATTTCTATGGAGAGACAAAAGGTGGTGGAGAAAGAGGCAGAGACCGAGAAAAAAATGGCGATAAGCGAAGCGGAAAAGAATGCCCATGTCAGCAAAATTCTCATGGAACAGAAGTTAATGGAAAAAGATAGTGCAAAAAGACAGCAAGAAATTGACAACGACATCTACCTTGCTCGCGAAAAGAGTCTGGCTGATGCAGACTTCTATAGAATGATGAAAGAAGCTGACTCGAATAAATTGAAGCTTACTCGGGAATTTCTCGAGCTTAAGTTCATTGAGGCAATTGCTGGTAACACAAAAATTTTCTTTGGTGATAAGATTCCCAAAATGGTATGGGATCAGAGGCTCCTAGGGAACTTATTTGAAAAGGTCTCAACTGAGGGACAAGAATATTATGAAGGGGAGTGA 1035 39.81 MANSEIGKLSTNYSVLFCNQDSVVIPSSSTLKSSLSFLHQVPEGHVGVYWRGGALLQTISDPGFHFKIPLITHYEPVQVTLQTDQVRDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLLNYGVQYDHTWIYDKIHHEINQFCSSHTLQQVYIDVFDQIDEKMKDALQGDCTRYAPGIEIISVRVTKPAIPETIRKNFEQMEVERTKVLISMERQKVVEKEAETEKKMAISEAEKNAHVSKILMEQKLMEKDSAKRQQEIDNDIYLAREKSLADADFYRMMKEADSNKLKLTREFLELKFIEAIAGNTKIFFGDKIPKMVWDQRLLGNLFEKVSTEGQEYYEGE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12170763 12173430 - Bda033139 Bda11g01178 16286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01178 344 PANTHER ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG 22 336 IPR033294 GO:0005783|GO:0031625
Bda11g01178 344 Pfam SPFH domain / Band 7 family 40 216 IPR001107 -
Bda11g01178 344 CDD SPFH_like_u3 39 323 IPR033294 GO:0005783|GO:0031625
Bda11g01178 344 Gene3D Band 7 domain 65 202 IPR036013 -
Bda11g01178 344 PANTHER ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG 22 336 - -
Bda11g01178 344 SUPERFAMILY Band 7/SPFH domain 68 205 IPR036013 -
Bda11g01178 344 SMART PHB_4 36 202 IPR001107 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01178 K23341 ERLIN; erlin - pop:7468153 538.495
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g44 . Blo16g01087 . Bda11g01178 Bpe13g01376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01178 . . . Bma06g00737 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005352 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 3 1 1 1 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01178 Bda_Chr11 FPKM 5.348942 6.677582 10.811838 11.091037 8.023756 7.058657 8.690331 14.227735 13.34679