Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01180 ATGGTTGCTCTCTTCGTCGGCTTGAACTCTGCTCCGCCGGAGGCGAAATGGTGGTCTATGAAGCATCTGAGGGGGAGAGTTACGGCCGATGTGTTTCCCTCCTTCCTTCCCAAAGAAGTCGACAAAATCAAAGATCCTTTTGCTCGGAAGCTGGCGTCTAGGATTGAGAGGGTTCCAGTGAGCTTTTCTCAAAATTGTGTTATGACTAGTTGTGTGAGGCCATCGATAAAGAGTGAAATGAGTCCAGTGGTTCTACTCCATGGTTTTGACAGCTCCTGTTTAGAGTGGAGATATACACATCCATTGCTTGAGGAGGCTGGTTTGGAGACTTGGGCTGTTGACATTCTTGGATGGGGATTTTCTGATTTAGAAAGCCTTCCACCTGTCGATGTGACATCAAAGCGGGAACACTTTTATCAGCTTTGGAGTACCTACATTAAAAGGCCTATGTTATTGGTTGGACCAAGCCTCGGTGCTGCTGGTGCTATTGATTTTGCTGTCAAATATCCAGAGGCTGTTGAAAAGCTTGTTTTGATAGATGCTAGTGTATATGCAGAAGGCACTGGAAACTTATCAACCTTACCGAGAGGGCTAGCATATGCCGGGGTGTCTTTGTTAAAGAGCATACCTCTGCGTCTCTATGTGAACGTGCTGGCATTCAATTCCATATCACTGAATACAAGCATTGATTGGATGAGAGTGGGTCGTTTACATTGCCTTCTACCTTGGTGGGAGGATACAACAGTGAATTTTATGATGAGCGGAGGTTATACTGTCAGCAGCTTGATAAAACAGGTAAAACAGAAGACACTCATCATATGGGGTGAGAATGATCAGATTATCAGCAACAAATTTGCAGTGAGATTGAACAGTGAGTTACCAAATTCAATTCTTCGACAAGTACCCGACTGCGGCCACATTCCTCACGTGGAGAAGCCGAGCATCGTCTCCCATTTTATCACGGAGTTTGTTAGAGAAGAATTCACTAGTAATTCAGAGATTGAACAGTGA 1011 44.71 MVALFVGLNSAPPEAKWWSMKHLRGRVTADVFPSFLPKEVDKIKDPFARKLASRIERVPVSFSQNCVMTSCVRPSIKSEMSPVVLLHGFDSSCLEWRYTHPLLEEAGLETWAVDILGWGFSDLESLPPVDVTSKREHFYQLWSTYIKRPMLLVGPSLGAAGAIDFAVKYPEAVEKLVLIDASVYAEGTGNLSTLPRGLAYAGVSLLKSIPLRLYVNVLAFNSISLNTSIDWMRVGRLHCLLPWWEDTTVNFMMSGGYTVSSLIKQVKQKTLIIWGENDQIISNKFAVRLNSELPNSILRQVPDCGHIPHVEKPSIVSHFITEFVREEFTSNSEIEQ 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12185772 12189552 + Bda007678.1 Bda11g01180 16288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01180 336 Gene3D alpha/beta hydrolase 73 330 IPR029058 -
Bda11g01180 336 PRINTS Alpha/beta hydrolase fold signature 166 179 IPR000073 -
Bda11g01180 336 PRINTS Alpha/beta hydrolase fold signature 152 165 IPR000073 -
Bda11g01180 336 PRINTS Alpha/beta hydrolase fold signature 107 122 IPR000073 -
Bda11g01180 336 PRINTS Alpha/beta hydrolase fold signature 270 284 IPR000073 -
Bda11g01180 336 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 26 330 - -
Bda11g01180 336 SUPERFAMILY alpha/beta-Hydrolases 82 325 IPR029058 -
Bda11g01180 336 Pfam Alpha/beta hydrolase family 83 313 IPR000073 -
Bda11g01180 336 PANTHER HYDROLASE 26 330 - -
Bda11g01180 336 PRINTS Epoxide hydrolase signature 166 179 IPR000639 GO:0003824
Bda11g01180 336 PRINTS Epoxide hydrolase signature 87 105 IPR000639 GO:0003824
Bda11g01180 336 PRINTS Epoxide hydrolase signature 107 122 IPR000639 GO:0003824
Bda11g01180 336 PRINTS Epoxide hydrolase signature 301 323 IPR000639 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01180 - - - mnt:21409074 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01180 Bda-Chr11:12185772 Bda12g00185 Bda-Chr12:1732885 5.80E-143 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g45 . Blo16g01089 . Bda11g01180 Bpe13g01378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0543 . . . . . . . Bda11g01180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001673 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 3 3 2 2 2 2 2 3 3 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01180 Bda_Chr11 FPKM 43.840462 44.331547 40.713474 39.109467 30.150494 29.02853 30.26243 38.186207 35.43988