Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01188 ATGTATAGGACTGTAGCTACGGCGGCAGCTTCGACCACAACCGCGACGGTGACCAAAGGAGGATCACCGTCGGATAATGTGGATTATGTGGTTACTTTGGATCAAGTTCCGTGGTGGAGCGATGCAGAATGTAGATCTTCATTGGAATTTGAAGGTGAAGATCCTTCTTTCTCTAATTCATACTTCCCCGATCCTCTGACCTCATTGTCTGGGCCGGAGAGCGGTATAAATGGAATGCTTTCGAGGTTTCCCGTCGATCAAGAAATTAATTCCAAGATATATATTTGGAGAGGGAATCCGTGGAATCTTGAGGTAGATGCCGTTGTCAATTCTACGAATGAGAGTTTGGATGAAGCCCACAGCAGCACAGGGTTGCACTCTGCAGCTGGATCTGGTCTTGCCGAAGAATGTGCCTCACTGGGCGGTTGTCGCACTGGGATGGCAAAAGTAACTAACGCATATGACCTTCCAGCTAGGAAGGTCATACATACTGTCGGCCCAAAGTATGCAGTAAAGTACCATACTGCAGCTGAAAATGCTTTAAGTCATTGCTATCGATCTTGTCTCGAACTTCTCATTGAAAATGGCCTTCAAAGCATTGCTATGGGCTGTATATACACTGAGAATAAAAACTATCCTCGTGAACCTGCTGCACATGTGGCTATAAGGACGGTACGGAGGTTTCTCGAGAAGCAAAAAGATAAAATTAAAGCAGTTGTATTTTGTACTGCCTCATCATCAGACACAGAGATATATAAAAGGCTGCTTCCGCTTTACTTTCCACGTGATAAACATGAAGAGGAAGTTGCCTCATCAAAACTTCCTGCAGATGTAGGAGATGAGAATGGCGAGACTGTTATAGATGAACGGAAGATCAGGATAAAGCCTTTGCCAAAGAAAAATATTCCAAAACCTCCTCCCCCACCTCTAGACGATCCTCCTGTTAGTAATGTTGGCTTGGCACGTAGGAGTTCGTCGTATTTGGATTCATATTTGGATCCTGCTTTTATGTCCTTAATTAAAGACCCAGATCAGAGACGGAGAGAGCAATGGGAAAAAACTGCCCAGGCGCAGAGTGGATGGAATTGTGCGAAAATGCTCGGATTGGGCGACCTTGGGGGGCCTCCACTATCTGCCGCTGAAGAATACTCACTTCATTCAAGATTTCTTGCCAAAGCAAATTCTCTTAATTTGTCTGAAATCGCAGAAATGAAAATAATTTATCGTGGTGGAGTTGATAGCGAAGGCCGTCCTGTGATGGTTGTTGTGGGAGCCCATTTTTTGTTGCGATGTCTCGATCTAGAGCGATTTGTTCTTTATGTGATAAAGGATTTTTTCCCTTCATTTCAGGAATTTGAGCCGTTGATACAGAAGCCTTATACGATTGTCTACTTCCATTCAGCAGCATCTTTGCAGCCTTATTCACCTTTTTCTGAAAAAAAAAAATCCAGTCGACCCGACTTGGGATGGATGAGAAGACTACAGCAAATACTCGGTCGGAAACACCAGCGGAACCTTCATGCAATATATGTTCTTCATCCTTCGTTTGGACTAAGGGCTACAATTTTGGCTATGCAACTGTTTGTAGACAATGCGGTATGGAACAAAGTGGTTTATGCTGATAAACTTCTGCAGTTGTTTAAATACGTTCCCCGCGAGCAGTTGACGATTCCCGATTTTGTCTTCCAGCATGATTTGGAAGTGAACGGAGGGAAGAGCGTTATGGTCGATCCTCGAACAAAGTATGTGTACCATCGACCTTAA 1764 44.1 MYRTVATAAASTTTATVTKGGSPSDNVDYVVTLDQVPWWSDAECRSSLEFEGEDPSFSNSYFPDPLTSLSGPESGINGMLSRFPVDQEINSKIYIWRGNPWNLEVDAVVNSTNESLDEAHSSTGLHSAAGSGLAEECASLGGCRTGMAKVTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQSIAMGCIYTENKNYPREPAAHVAIRTVRRFLEKQKDKIKAVVFCTASSSDTEIYKRLLPLYFPRDKHEEEVASSKLPADVGDENGETVIDERKIRIKPLPKKNIPKPPPPPLDDPPVSNVGLARRSSSYLDSYLDPAFMSLIKDPDQRRREQWEKTAQAQSGWNCAKMLGLGDLGGPPLSAAEEYSLHSRFLAKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVIKDFFPSFQEFEPLIQKPYTIVYFHSAASLQPYSPFSEKKKSSRPDLGWMRRLQQILGRKHQRNLHAIYVLHPSFGLRATILAMQLFVDNAVWNKVVYADKLLQLFKYVPREQLTIPDFVFQHDLEVNGGKSVMVDPRTKYVYHRP 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12237670 12245319 + Bda007687.1 Bda11g01188 16296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01188 587 Pfam Divergent CRAL/TRIO domain 416 565 IPR001251 -
Bda11g01188 587 CDD Macro_GDAP2-like 91 259 IPR035793 -
Bda11g01188 587 MobiDBLite consensus disorder prediction 299 314 - -
Bda11g01188 587 SUPERFAMILY CRAL/TRIO domain 398 555 IPR036865 -
Bda11g01188 587 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 397 561 IPR001251 -
Bda11g01188 587 SMART YBR022w_8 92 221 IPR002589 -
Bda11g01188 587 MobiDBLite consensus disorder prediction 269 318 - -
Bda11g01188 587 CDD SEC14 404 558 IPR001251 -
Bda11g01188 587 PANTHER APPR-1-P PROCESSING ENZYME FAMILY PROTEIN 11 567 - -
Bda11g01188 587 ProSiteProfiles Macro domain profile. 80 260 IPR002589 -
Bda11g01188 587 SMART sec14_4 397 564 IPR001251 -
Bda11g01188 587 Gene3D - 399 568 IPR036865 -
Bda11g01188 587 Gene3D Leucine Aminopeptidase, subunit E, domain 1 22 265 IPR043472 -
Bda11g01188 587 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 11 567 - -
Bda11g01188 587 SUPERFAMILY Macro domain-like 83 289 IPR043472 -
Bda11g01188 587 Pfam Macro domain 109 221 IPR002589 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01188 K24997 GDAP2; ganglioside-induced differentiation-associated protein 2 - mnt:21400244 956.051
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02135 Bda11g01188 CCT
Bda01g02135 Bda11g01188 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01027 Bda-Chr5:58730387 Bda11g01188 Bda-Chr11:12237670 1.23E-09 dispersed
Bda14g00207 Bda-Chr14:1431542 Bda11g01188 Bda-Chr11:12237670 1.46E-20 transposed
Bda01g02135 Bda-Chr1:57327029 Bda11g01188 Bda-Chr11:12237670 0 wgd
Bda11g01188 Bda-Chr11:12237670 Bda11g01314 Bda-Chr11:14204465 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g75 Blo01g00446 Blo16g01097 Bda01g02135 Bda11g01188 Bpe13g01386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0547 Cone9ag0558 . . . . . . . Bda11g01188 . . Bma01g00115 Bma06g00726 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01744 Chy09g00682 Cme09g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003700 3 2 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 3 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01188 Bda_Chr11 FPKM 0.425844 0.640608 0.329018 0.324733 0.0 0.0 0.0 0.785215 0.442254