Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01189 GAAATGGTTCGAGGCCTTTCAGTATGTAATCTTCAGGCCTCAAGAAATGATAGTGTTTATGGGTCAACCCCTTCATGGAGGAGTCATGTCAAGCTGATGAGGAATACTTTGATAACTTCTATGCTTTCCAGAAATTATATCTGGGGTAAATATGCACAGGGATGTTTCTTATCCAGCACACCCACAATGTTTAGACAGAGAAATTGTAGAGTTCAAGCTGGGTGGCTGTTCAAAGGGAGTGGACAAGGGTTGGATGCAAATTCTGAGCGTAGTGAGAGTGCTAATCAAGATATTTTGATCTTCTTTTTCCAGCTTGATCTGGAAACCCGAGTACAGTATGCCTTGAATCTGGAGCAATATGAAATTGCTCAACAACTGAGAAGCAAGATTACGGAGGTTGAAGCAGAAATAAGCAGACGGGTAGAATCAAAAAGAGGACTGTCTTCAAAGAGTGATGTGCAGGACAAAGCTTTAAGTATCATTCGGCTACGTGCAGATCTGCAGAATGCTATTGACAGTGAAAATTATTCCTTGGCAGCTCAACTACGGGATGAAATTTCCAATTTGGAGGCAGAATCTCTTGCTGCGTCAGCAAAAGCTCTGGTATATGAAAATGCAAATTATTCATTTCGCCTTGGACAGAAAGTGAAGCACAAAATCTTCGGATATAAAGCTGTAGTTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGCTCATGGAAGGAGGTTGCGCGTGTTGAAAAGTTGTCACGTGGTTCTAATCAGCCATTTTATCAGGTTTTAGTGGATGTTCGTGCCGACCCTGATCTATTGGTGGCATATGTTCCTGAAGAGAATCTCCTATCTCCTGAGAAACCTGACCAGGGCAGATTTGACCATCCTTACACTTCATTCTTATTTTATGGAGCGGATGCAGCTGGTGACTTCATTCCGATCAAGCAACTGCGCGAGAAGTACAACCGGCCCCGACATGAAATACCAATGGATCTCGATGACGGAGAACAAGGTGGTGAAACTTGA 1020 43.04 EMVRGLSVCNLQASRNDSVYGSTPSWRSHVKLMRNTLITSMLSRNYIWGKYAQGCFLSSTPTMFRQRNCRVQAGWLFKGSGQGLDANSERSESANQDILIFFFQLDLETRVQYALNLEQYEIAQQLRSKITEVEAEISRRVESKRGLSSKSDVQDKALSIIRLRADLQNAIDSENYSLAAQLRDEISNLEAESLAASAKALVYENANYSFRLGQKVKHKIFGYKAVVCGMDPVCCESSSWKEVARVEKLSRGSNQPFYQVLVDVRADPDLLVAYVPEENLLSPEKPDQGRFDHPYTSFLFYGADAAGDFIPIKQLREKYNRPRHEIPMDLDDGEQGGET 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12246696 12249236 + Bda007688.1 Bda11g01189 16297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01189 339 PANTHER SI:DKEY-261L7.2 88 333 - -
Bda11g01189 339 SMART YccV_like_2_a 207 311 IPR011722 GO:0003677
Bda11g01189 339 Pfam Hemimethylated DNA-binding protein YccV like 209 305 IPR011722 GO:0003677
Bda11g01189 339 PANTHER SI:DKEY-261L7.2 88 333 - -
Bda11g01189 339 SUPERFAMILY YccV-like 208 304 IPR036623 GO:0003677
Bda11g01189 339 Pfam UvrB/uvrC motif 160 191 IPR001943 GO:0005515
Bda11g01189 339 Gene3D - 206 306 IPR036623 GO:0003677
Bda11g01189 339 TIGRFAM yccV: hemimethylated DNA binding domain 208 309 IPR011722 GO:0003677
Bda11g01189 339 Coils Coil 179 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01189 - - - jre:109002884 494.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01189 Bda-Chr11:12246696 Bda11g01315 Bda-Chr11:14216930 5.91E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g76 . . . Bda11g01189 Bpe13g01387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0548 . . . . . . . . Bda11g01189 . . . Bma06g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010259 2 3 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 31