Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01200 ATGTCTGCGTCATACCTTCCAGCTTCTACCGAATCAGTTGCTCAGGCTTTAGAAGCAAAAACTGCATCAGAAGCTATCTCCATTCTCTATCGCATACTTGAAAACCCTTCATCTTCTTTGGAGGCACTGAGGATAAAAGAACAGGCCATCACAAATCTATCTGATCTTCTTAGGCAAGAGAATCGAGCAAAGGATCTTCGAGGTCTTCTGACTCAACTGAGGCCTTTCTTCAACTTGATTCCAAAAGCAAAAACGGCAAAAATTGTTCGTGGAATTATCGATGCAGTGGCCAAAATACCTGGAACATCAGATCTTCAGATTTCTCTCTGCAAAGAAATGGTGCTGTGGACCCGTGCTGAGAAGCGAACTTTCTTACGGCAGCGAGTGGAGGCGAGACTTGCGGCTCTTTTGATGGAAAATAAGGAGTATCCAGAAGCACTTAATCTCCTTTCAGGCTTAATTAAGGAAGTTAGAAGATTGGATGATAAGCTTCTTCTTGTGGACATAGACCTGTTGGAGAGCAAGCTCCATTTCTCTTTAAGGAATCTCCCCAAAGCAAAGGCTGCACTAACAGCCGCAAGAACAGCTGCCAACGCCATATATGTGCCTCCAGCTCAGCAGGGGACAATTGACCTGCAGAGTGGCATCCTCCATGCTGAAGAGAAGGATTACAAAACTGCTTATAGTTATTTTTTTGAAGCTTTCGAAGCTTTCAATGCGCTTGAGGATCCTCGGGCTGTATTTAGCCTCAAGTATATGTTACTGTGCAAGATAATGGTTAATCAGGCTGACGACGTGGCTGGAATTATCTCATCAAAGGCAGGACTGCTATATCTGGGGCCTGAGTTGGATGCCATGAAAGCAGTTGCCGATGCACATTCAAAGCGATCTCTGAATCTTTTCGAGATTGCCCTTCGAGATTTTAAGGCTCAGCTAGAGGAAGACCCAATTGTCCATAGACATCTCTCTTCTCTCTATGACACTCTCTTAGAGCAGAATCTCTGTAGGCTGATCGAACCTTTCTCGAGAGTCGAGATTTCTCACATTGCTGATCTGATTGAGCTGCCCATGGACCATGTGGAGAAGAAGCTATCTCAGATGATTCTCGATAAGAAATTTGCAGGGACTTTAGATCAGGGTGCTGGATGCCTTGTTATATTCGACGATCCAAAGACCGACGCAATATACCAGGCTTCGTTGGAAACCATTTCGAACATTGGGAAGGTGGTCGATAGCCTTTATACTGAGGAATCGATCCTACTCTACTGTTTTTTCTCTATGGATTCTCTCTCTTCCGTCTCCCCTTCCCTTGTTCTCCCTCCTACCAATAGGCTAAGCTTGGGAAACCGGTTCCCGCTTTCTTCCTGGAGTTTCCGTTCGCATCTTCCTCGCGCCTCCCATTTTTTAGGTTCTTGTAGTAGAAGACACACAGAAACTTCCTGTAAGATGGGAGGCGGTGGAGCTGGTAAGAAAGGCGGTCGCGATGACATGGGAAGCGAAGATGTGGATCTTCAGCGAGCGCTTAGCTTGGACGGATCCATTCCGGGCACGTCCGATGAGTTTGTGAAACGAGTTTCCTCCCGTGCTTACGATATGCGGAGGCATCTGCATCAGACTTTTGATAGCAGCAGTTACGACGGTATATTTTCTAAAATCGAATTCGATCATAGGATATTCACCTTGATTCAAGTAGAAAGAGTTGTGAAATGTTTGTTTTTTCATCATTTTGATTTAGTATTGGAGGCCAATCCATGGAGAGAAACTCCAAAGCCTGTATATGTTCTAACACAGAGAGAAAATCAGCTATGCACGATGAAAACCAGAAGAAATAGAAGTGAAGTCGAAAGGGAGCTCGGTTTATTATTTTCAAAAAGAGGAAAATTTAGATCTGGATTGGATAATCAAGTTAAACCATCTAGAACTGGAACAAAATTCCAGATGCTCGTAGAAGACATCAGAGACGGGGTTCTAGTTTTTGAAGATGAACACGAAGCAGAGATGTATTGCGATTTATTGCAAGGAGGAGGTCGAAGCTGCGAAGGCGTTGCTGAAGTCGAAGCTTCATCAGTATTTGATATTTGCCGGAAAATGAGAGCACTTGCAGTGTTGTTCCGGCGAGGAAGGACACCTCCCCAGCCTCAAAGCCTTGAGCTCAACCTCCGGGCCCGAAAGCGATCTCTTGAAGACGAAGAAGACTGA 2199 44.88 MSASYLPASTESVAQALEAKTASEAISILYRILENPSSSLEALRIKEQAITNLSDLLRQENRAKDLRGLLTQLRPFFNLIPKAKTAKIVRGIIDAVAKIPGTSDLQISLCKEMVLWTRAEKRTFLRQRVEARLAALLMENKEYPEALNLLSGLIKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVNQADDVAGIISSKAGLLYLGPELDAMKAVADAHSKRSLNLFEIALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEISHIADLIELPMDHVEKKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYQASLETISNIGKVVDSLYTEESILLYCFFSMDSLSSVSPSLVLPPTNRLSLGNRFPLSSWSFRSHLPRASHFLGSCSRRHTETSCKMGGGGAGKKGGRDDMGSEDVDLQRALSLDGSIPGTSDEFVKRVSSRAYDMRRHLHQTFDSSSYDGIFSKIEFDHRIFTLIQVERVVKCLFFHHFDLVLEANPWRETPKPVYVLTQRENQLCTMKTRRNRSEVERELGLLFSKRGKFRSGLDNQVKPSRTGTKFQMLVEDIRDGVLVFEDEHEAEMYCDLLQGGGRSCEGVAEVEASSVFDICRKMRALAVLFRRGRTPPQPQSLELNLRARKRSLEDEED 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12330571 12336818 + Bda007700.1 Bda11g01200 16308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01200 732 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 3 416 - -
Bda11g01200 732 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 128 IPR040773 -
Bda11g01200 732 SUPERFAMILY Winged helix DNA-binding domain 314 396 IPR036390 -
Bda11g01200 732 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 415 IPR040780 -
Bda11g01200 732 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Bda11g01200 732 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Bda11g01200 732 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-LIKE PROTEIN 3 416 - -
Bda11g01200 732 Pfam PCI domain 285 386 IPR000717 -
Bda11g01200 732 SMART PINT_4 320 403 IPR000717 -
Bda11g01200 732 MobiDBLite consensus disorder prediction 476 499 - -
Bda11g01200 732 SUPERFAMILY TPR-like 131 322 IPR011990 GO:0005515
Bda11g01200 732 Gene3D - 46 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01200 K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6 - zju:107413645 706.827
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02140 Bda11g01200 CCT
Bda01g02140 Bda11g01200 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00601 Bda-Chr2:46867855 Bda11g01200 Bda-Chr11:12330571 1.21E-15 dispersed
Bda09g01314 Bda-Chr9:44924351 Bda11g01200 Bda-Chr11:12330571 7.65E-16 dispersed
Bda11g01200 Bda-Chr11:12330571 Bda13g01213 Bda-Chr13:22562953 4.41E-09 dispersed
Bda01g02140 Bda-Chr1:57357883 Bda11g01200 Bda-Chr11:12330571 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g963 Blo01g00440 Blo16g01102 Bda01g02140 Bda11g01200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01200 . Bpe02g02328 Bma01g00111 Bma06g00711 . . . . . . . . Cpe07g00642 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004931 2 1 2 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 2 1 2 1 2 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01200 Bda_Chr11 FPKM 38.678528 37.634846 31.461748 31.572344 1.924977 0.90348 1.550223 1.562159 1.522342