Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01202 ATGAATGCAATTAAGGTCGTCGTCGTCCTCCTCGTAGGGTTTCTAATATGTGAATCGGAATCTGTACGGTTCGAGGTGCAGTTGGGTCAAGCCAAGTGCATCGCGGAGGAAATGAATATCAATTCCATGACAGTCGGAAAGTACAGCGTTATTAATTCCAACGACACCCAACCCCTGCCCCATTCTCACAAAGTCACCGTCCGGGTGACTTCTCCTTCCGGGACGAATTATCATCAAGCAGACGAAGTGGAGTCCGGCCACTTTGGATTTGTGGCGCCGGAGGCAGGCAGTTACATGACGTGCTTTTGGACTAATGAGCATAAACCCGAAATTACATTGACTGTAGATTTCGAGTGGAAAACAGGAGTGGCTGCGAAGGATTGGACAAATGTTGCTAAGAAAGGAACTGTTGAAAGTATGGAGTATGAACTGAAAAGGCTTCTTGACGATGTAAAGTCCATTCAAGATGAGATGTTATACCTTAGAGAAAGGGAAGAAGAAATGCAGGAGTTAAACAGAGCAACCAACACTAAAATGGCCTGGTTGAGTCTTCTTTCGCTTATTGTTTGCTTATCGGTGGCCGGATTGCAGCTATGGCATTTGAAGACCTTTTTCGAGAAAAAGAAGATCATTTGA 636 44.97 MNAIKVVVVLLVGFLICESESVRFEVQLGQAKCIAEEMNINSMTVGKYSVINSNDTQPLPHSHKVTVRVTSPSGTNYHQADEVESGHFGFVAPEAGSYMTCFWTNEHKPEITLTVDFEWKTGVAAKDWTNVAKKGTVESMEYELKRLLDDVKSIQDEMLYLREREEEMQELNRATNTKMAWLSLLSLIVCLSVAGLQLWHLKTFFEKKKII 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12345453 12347649 - Bda007702.1 Bda11g01202 16310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01202 211 Coils Coil 137 174 - -
Bda11g01202 211 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN P24DELTA7 6 211 - -
Bda11g01202 211 ProSiteProfiles GOLD domain profile. 31 146 IPR009038 -
Bda11g01202 211 Pfam emp24/gp25L/p24 family/GOLD 22 206 IPR009038 -
Bda11g01202 211 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 6 211 IPR015720 -
Bda11g01202 211 SMART EMP24_GP25L_2 21 206 IPR009038 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01202 K20352 TMED10, ERV25; p24 family protein delta-1 - rcu:8281849 287.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01202 Bda-Chr11:12345453 Bda12g00172 Bda-Chr12:1635153 1.31E-86 dispersed
Bda11g01202 Bda-Chr11:12345453 Bda07g01341 Bda-Chr7:16174597 1.32E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g959 . . . Bda11g01202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01202 . Bpe02g02329 . Bma06g00708 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007538 1 1 2 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01202 Bda_Chr11 FPKM 6.776204 7.397294 4.114831 5.339362 7.71155 8.351667 6.332644 6.184416 7.559475