Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01210 ATGGATGAACCGACCTCATCGATCTGTAACCTAGGTATTTTAGACAAACTCAGTGACCGCACAATTCAAGAGCTACTTCATAGCTACGACGGATTCTTCAAAACCACGGAGCATCTCTTAAATGGCGGTGCCGATCTTTCTGTGCATTCAGAGTTTGTAGCTCACGTCCACTCTCTATGCAGAAACGGCCTCGTCTCTCTGGTTTGCGATCACTTTCTTCGCACGCTTGAGAAAAACTTCGAAAACCAGGGGGCTTCCAGATTTTGGATGCATTTCCAGGCTTATGGAGATTCTTCGATTTTAATCAGCGATAACCCCATTAGCTCGAACTATGAAGTTCAGGAAGTTCTATGCAAAGCTTTGGAAGAGATATCTTCGGAAAAGAAATATCTGGAAGATTGTTTGTCGATACTGGCTGATTCTTTGCAGACATGGAAGGACAATGTATCAGAAGGAAATCACAGTTCACATGCAGAAAGATCATATCTCATGGCTAAGCTTCAGTACCTTATTTCCTCAGTCCTTATGGCTTCTCTCCCCCGCCATTTTCCAGACATACTGCACTGGTACTTTAAAGGAAGATTGGAGGAGTTGAACACAATCATGGCAGGACATGAATCTCAAAGCGGAGACGACATGGATTTGGATAAAAAAAGTGAGAGTTTAAATTCAGATAAGTTGGATGATGATGATGATGATGATAAATTCCATCAGCAAGAGTTCTCTGAAGTTGGTAAATTAGTGAAGAACATTGGAAAGGTCGTTTTTGATCTTAGAAATCTCGGGTTTACATCTTTGGCGGAAGACGCCTATGCCTCTGCTATATTTTTGCTTCTTAAGGATAAAGTTCATGAACTTGCCAGTGATGATTATAGAAGTTCTATATTGGAGTCTATAAAAGGGTGGATTAAGGCTGTGCCCCTCCAGTTTCTACATGCCCTTCTTGCATATCTCGGAGAATCTGATGGTAAAGATAGTTCTTTGTCCGGTTTGAAATCGCCTTTAGCTACCAACTTGTCGTCATCCTATTCTGGACTTGATACTTCTTCTGAAGTACTTGTGAGATGGCAGTTGCGATTGGAATATTTTGCTTATGAAACACTCCAAGATTTGAGAATAGCCAAACTGTTTGAAATAATAGTGGATTATCCTGAGAGCTCTCCTGCAATCGAAGATCTTAAGCAATGCCTTGAATATACCGGACAACACTCTAAGCTAGTTGAATCGTTCATCTCATCATTGCAATATCGCCTGCTCACTGCAGGTGCCTCAACAAATGATATATTGCATCAATATGTTTCGACAATAAGAGCACTCCGCACTATAGACCCAGCAGTGGTTTTTCTTGAAGCAGTTGGTGAACCGATAAGGGACTATTTAAGACGAAGAAAAGATACCATTAAATGCATTGTAACCATGCTAACTGATGGAACTGGTGGAAATCCAAATGCATCTGGAAATACAGGTGATAGCCTTCTTGAAGAATTAAACAAAGATGAAGAAAGTCAAGATAATACTGGTATTTACGATGACTTTCACACTGATGATAAGCAAGCTTGGATAAATTGTAGTCGCTGGGAGCCTGACCCTGTCGAAGCCGACCCAGCAAAGGGTGGCAGGACTAGAAGGAAGGTTGACATACTCGGAATGCTTGTTAGTATAATTGGTTCGAAAGACCAACTAGTCAATGAATATCGAGTTATGCTTGCCGAAAAGCTTCTGAACAAATCTGATTATGATATCGACTCAGAGATACGTACTCTAGAACTACTTAAGGTGAGTCCGATTTTAGTTACTGTATATCTGCAGATACATTTTGGAGAAAGCAGTATGCAGAAATGTGAAATTATGCTGAATGATCTGATTGATTCGAAGAGGACAAACTCAAACATTAAAGCATCTAAGACAGTTCAATCTGTCTCAGCTGTTGAGCTCCAGGAAAGTGCTCAATCAATGGAAATGCTAGATGCAACAATCATATCTTCAAATTTCTGGCCTCCAATTCAGGATGAGAGCCTTACCCTACCTCCACAAATTGACAATCTGCTTTCTGATTATGCAAAGCGATTTAATGAAATCAAGACACCTCGGAAGCTACAGTGGAAGAAAAATTTGGGAACCGTGAAGTTGGAATTGCAATTTGAAGGAAGAGAAATACAGTTCACAGTTGCTCCAGTCCATGCGGCAATTATTATGCAATTTCAAAATCAAACAAGGTCAATTGAGCATTTTATTTCAATAATCATTCATCTTCTTATATTTCAAATATCTGAAGTTTCTTCTTTTAGCTGGAGCTCCACAACTCTTGCAGCTGCTGTTGGTTTGCCAGCAGATATCCTCAACCGGAGGATAAATTTCTGGGTTAGTAAGGGAATCATTGCAGAATCACTTGGGGCAGACTCTAACGACCATGTCTATACACTCGTGGAAAGCATGGGTGAGTCTAATAAGAACGGTGCAAACCACGACAATTGCGATGGGGAGCTTTTAATAGGCGACGAGGAGGGAGAGAGATCCATCACCTCTGTGGAGGACCAGCTGCGCAAGGAAATGACTGTGTATGAGAAGTTTATCATGTTTTGTGTTGCCGACCCGTCCTACGATAAATCTCTCCAGCAGCTGCAAAGCTTTTTATCAGGGCTTGTTTCTGAAGAGAAGTTGGAGCTAAAAGATGGCAGCTACATCTTGAAGAAATAA 2697 40.93 MDEPTSSICNLGILDKLSDRTIQELLHSYDGFFKTTEHLLNGGADLSVHSEFVAHVHSLCRNGLVSLVCDHFLRTLEKNFENQGASRFWMHFQAYGDSSILISDNPISSNYEVQEVLCKALEEISSEKKYLEDCLSILADSLQTWKDNVSEGNHSSHAERSYLMAKLQYLISSVLMASLPRHFPDILHWYFKGRLEELNTIMAGHESQSGDDMDLDKKSESLNSDKLDDDDDDDKFHQQEFSEVGKLVKNIGKVVFDLRNLGFTSLAEDAYASAIFLLLKDKVHELASDDYRSSILESIKGWIKAVPLQFLHALLAYLGESDGKDSSLSGLKSPLATNLSSSYSGLDTSSEVLVRWQLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLQYRLLTAGASTNDILHQYVSTIRALRTIDPAVVFLEAVGEPIRDYLRRRKDTIKCIVTMLTDGTGGNPNASGNTGDSLLEELNKDEESQDNTGIYDDFHTDDKQAWINCSRWEPDPVEADPAKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKVSPILVTVYLQIHFGESSMQKCEIMLNDLIDSKRTNSNIKASKTVQSVSAVELQESAQSMEMLDATIISSNFWPPIQDESLTLPPQIDNLLSDYAKRFNEIKTPRKLQWKKNLGTVKLELQFEGREIQFTVAPVHAAIIMQFQNQTRSIEHFISIIIHLLIFQISEVSSFSWSSTTLAAAVGLPADILNRRINFWVSKGIIAESLGADSNDHVYTLVESMGESNKNGANHDNCDGELLIGDEEGERSITSVEDQLRKEMTVYEKFIMFCVADPSYDKSLQQLQSFLSGLVSEEKLELKDGSYILKK 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12452977 12459138 + Bda007715.1 Bda11g01210 16318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01210 898 Pfam Cullin family 544 740 IPR001373 GO:0006511|GO:0031625
Bda11g01210 898 SMART APC2_2 857 896 IPR014786 -
Bda11g01210 898 Gene3D Cullin; Chain C, Domain 2 654 817 - -
Bda11g01210 898 PANTHER BNAC04G32030D PROTEIN 14 741 - -
Bda11g01210 898 MobiDBLite consensus disorder prediction 206 234 - -
Bda11g01210 898 MobiDBLite consensus disorder prediction 209 234 - -
Bda11g01210 898 ProSiteProfiles Cullin family profile. 550 788 IPR016158 -
Bda11g01210 898 Pfam Anaphase promoting complex (APC) subunit 2 859 895 IPR014786 -
Bda11g01210 898 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 14 741 IPR044554 -
Bda11g01210 898 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 739 898 IPR044554 -
Bda11g01210 898 Gene3D Cullin Repeats 490 637 - -
Bda11g01210 898 SUPERFAMILY Cullin homology domain 522 809 IPR036317 -
Bda11g01210 898 Gene3D - 858 898 IPR036388 -
Bda11g01210 898 PANTHER BNAC04G32030D PROTEIN 739 898 - -
Bda11g01210 898 SMART cul_2 546 714 IPR016158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01210 K03349 APC2, ANAPC2; anaphase-promoting complex subunit 2 - qsu:112005549 1211.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00287 Bda-Chr8:2981416 Bda11g01210 Bda-Chr11:12452977 2.73E-07 dispersed
Bda11g00530 Bda-Chr11:5569311 Bda11g01210 Bda-Chr11:12452977 6.63E-06 dispersed
Bda11g01210 Bda-Chr11:12452977 Bda07g01355 Bda-Chr7:16379117 9.71E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g937 . Blo16g01110 . Bda11g01210 Bpe13g01404 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0944 Cone19ag0936 . . . . . . . . . Bda11g01210 . . . Bma06g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010260 1 2 1 2 1 1 1 1 1 1 1 1 1 0 1 1 1 2 0 1 1 0 2 1 1 1 1 1 1 1 31