Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01211 ATGGGTCTTTGCAGGAAAATGGCAGTCTCTGGTTTTCTCGTAATGTGCTTTCTCTTGTCTATTTGCTCCGCCAATGGCTATGGCGGAGAAGGCTGGATTAACGCCCACGCCACCTTCTACGGCGGAAGCGATGCCTCAGGAACAATGGGTGGGGCTTGTGGGTACGGAAACCTCTACAGCCAAGGCTATGGCACAAACACAGCAGCTCTAAGCACCGCTCTGTTCAACAGCGGACTGAGCTGCGGCTCTTGCTACGAGATCAGATGCGCCGGCGACCGGAAATGGTGCCTTCCTGGCTCGATTGTGGTGACGGCGACCAACTTTTGCCCGCCCAATAATGCACTTCCTAACGACGCTGGCGGCTGGTGCAACCCTCCCAGGCACCATTTTGACCTTTCTCAGCCTGTTTATCAACACATTGCGCAGTACAGAGCTGGAATAGTCCCTGTTTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGGATCCGATTCACCATTAACGGCCACTCCTACTTCAACCTGGTTCTGATCACAAACGTGGGCGGCGCCGGCGACGTCCATGCAGTTTCCGTCAAAGGTTCCAGAACCGGTTGGCTGCCAATGTCCAGAAACTGGGGCCAAAACTGGCAGAGCAACTCCTACCTTAACGGACAGAGCCTTTCGTTCAAAGTCACCACCAGCGACGGGCGGACCATGATGTCCTACAACGTTGCTCCGGCCGGCTGGTCCTTCGGGCAGACCTACAGTGGGGCTCAATTTATGTAG 768 55.47 MGLCRKMAVSGFLVMCFLLSICSANGYGGEGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIRCAGDRKWCLPGSIVVTATNFCPPNNALPNDAGGWCNPPRHHFDLSQPVYQHIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWLPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTMMSYNVAPAGWSFGQTYSGAQFM 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12476870 12479985 + Bda007717.1 Bda11g01211 16319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01211 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Bda11g01211 255 SUPERFAMILY PHL pollen allergen 159 250 IPR036749 -
Bda11g01211 255 SUPERFAMILY Barwin-like endoglucanases 13 180 IPR036908 -
Bda11g01211 255 PANTHER EXPANSIN-A15 11 254 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Bda11g01211 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bda11g01211 255 Gene3D - 20 158 IPR036908 -
Bda11g01211 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bda11g01211 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Bda11g01211 255 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bda11g01211 255 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Bda11g01211 255 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Bda11g01211 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Bda11g01211 255 Pfam Lytic transglycolase 67 152 IPR009009 -
Bda11g01211 255 SMART dpbb_1 67 152 IPR007112 -
Bda11g01211 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Bda11g01211 255 PANTHER EXPANSIN 11 254 - -
Bda11g01211 255 Gene3D - 162 255 IPR036749 -
Bda11g01211 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g01473 Bda11g01211 CCT
Bda07g01473 Bda11g01211 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00541 Bda-Chr6:7696263 Bda11g01211 Bda-Chr11:12476870 3.42E-141 dispersed
Bda11g01211 Bda-Chr11:12476870 Bda12g00165 Bda-Chr12:1575057 1.98E-141 dispersed
Bda06g00450 Bda-Chr6:6546181 Bda11g01211 Bda-Chr11:12476870 7.11E-93 transposed
Bda08g01078 Bda-Chr8:23613070 Bda11g01211 Bda-Chr11:12476870 2.96E-15 transposed
Bda12g00322 Bda-Chr12:3555801 Bda11g01211 Bda-Chr11:12476870 1.54E-93 transposed
Bda08g01191 Bda-Chr8:48014944 Bda11g01211 Bda-Chr11:12476870 1.88E-85 transposed
Bda10g01067 Bda-Chr10:44677129 Bda11g01211 Bda-Chr11:12476870 3.35E-157 wgd
Bda11g01211 Bda-Chr11:12476870 Bda07g01473 Bda-Chr7:27452304 1.25E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01211 - - pop:7460697 471.47