Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01213 AGAATTATGCAGAATCAGTACGTGAACTTGGTCTTATCCACTGATGCAAAACCCAGGTTGAAATGGACTGCAGAGCTTCATCAGAGATTTGTGGAAGCGGTTCTTCAGCTTGGAGGGGCAGATAAGGCCACTCCGAAGAGTTTGATGAGGGTGATGGGTATTCCTGGATTGACTTTATACCACCTGAAGAGCCATTTACAGGCATTTTTTAATTCCCTGTACTTTTGTACTGCTATTGTTCTTCATCCGTCTTTGCCAAAAATGAAGATGATGATGAAGAAGTGGTTAAATTATTTTGTGGGTTTTTCTTTTTCTGTAGAAATTCAGGCTGGGAAGAAGTCAACAGCCGGAAACCAGCTCCGACCATCTGGAAGGTTGTTTTACTGCATCATTGAAAAACCGATGACCGTAATGAATAAATTTCTTGTGTCAAACTTTAGCATAAAGATTTCTCAAGCTCTGCAACTGCAATTAGAGGTCCAACGGAAATTACACGAGCAGATTGAGGTTCAGAGGCATTTGGAGCTGAGAATTGAAGCTCAGGGAAAGTATTTACAGTCGGTTCTAAAAAAAGCACAAGAAACACTAGCCGGGTATTCTTCTTCTTCTTCGTCTTCTCCGGGATTAGAGCAAGCCAAACAGAAACTCTCTCAGCTAGTCTCGATGGTCAAAAATGGCGGACCAAGTTCTTCACTTTCAGAACTAACCGAAATGGAAGGACTGAGAGGGACAGTGCAGTCCATTGAAAGCTCCTTAACTTCAACAGAAAGCTCGCCATCTGTTGAACTGTCATTAATGGAGATTTACAGAACAGATGAGCACTGTAACGGTCAGAAGAAGAGGAGTAGAAGCTTAACTCGTGAAGAAAATGGAGAAGATAAAGTTCGTAGTAAAAGATCACCGACAATTATGGAAGACGATAAACTAATGCAGATGATTGACTTGAACAGTCGATTTGAGTACGATGATTTTGAGTTTTCTCCCAAAGAAATGGACCCAAATGGGTTGAAGCCAACGTAA 1020 41.37 RIMQNQYVNLVLSTDAKPRLKWTAELHQRFVEAVLQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQAFFNSLYFCTAIVLHPSLPKMKMMMKKWLNYFVGFSFSVEIQAGKKSTAGNQLRPSGRLFYCIIEKPMTVMNKFLVSNFSIKISQALQLQLEVQRKLHEQIEVQRHLELRIEAQGKYLQSVLKKAQETLAGYSSSSSSSPGLEQAKQKLSQLVSMVKNGGPSSSLSELTEMEGLRGTVQSIESSLTSTESSPSVELSLMEIYRTDEHCNGQKKRSRSLTREENGEDKVRSKRSPTIMEDDKLMQMIDLNSRFEYDDFEFSPKEMDPNGLKPT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12502897 12504436 + Bda007720.2 Bda11g01213 16321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01213 339 Pfam MYB-CC type transfactor, LHEQLE motif 149 195 IPR025756 -
Bda11g01213 339 Gene3D - 16 71 - -
Bda11g01213 339 MobiDBLite consensus disorder prediction 273 304 - -
Bda11g01213 339 SUPERFAMILY Homeodomain-like 16 71 IPR009057 -
Bda11g01213 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 325 IPR044848 GO:0003700
Bda11g01213 339 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 71 IPR006447 GO:0003677
Bda11g01213 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 5 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01213 - - - jre:108980862 250.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01469 Bda11g01213 CCT
Bda07g01469 Bda11g01213 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00350 Bda-Chr11:3890043 Bda11g01213 Bda-Chr11:12502897 2.85E-43 dispersed
Bda11g01213 Bda-Chr11:12502897 Bda13g00487 Bda-Chr13:5755722 6.15E-51 dispersed
Bda11g01213 Bda-Chr11:12502897 Bda07g01469 Bda-Chr7:27375516 2.47E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g923 . . . Bda11g01213 . . Bma14g01649 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0942 Cone6ag0578 Cone9ag0583 . . . . . Blo11g00775 Bda07g01469 Bda11g01213 Bpe11g01644 . . Bma06g00696 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16673 PF14379 Myb_CC_LHEQLE 2.10E-20 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01213 Bda_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.041048