Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01221 TCTGTGAAGCGAGCATACGACGCATTGTTGTTGGATGCTGGAGGAACCCTTTTGCAGTTGGCTAAACCAGTAGAGCAGACTTATGCAGAAATCGGTCGCAGTTACGGTTTAACAGCTCCTCCTGCTCAGATAAAGCAAGGATTTAAGAGAGCTTTTACTGCTCCATGGCCAGAAAAGCTTAGATATCTGGGGGATGGAAGGCCGTTTTGGAAACTTGTCGTTTCGGAAGCCACTGGTTGTGCTGACAGTAATTATTTTGAAGAAGTATACCAGTACTATGCAGAAGGTGATGCATGGCATCTCCCAGAAAAAGCTCAAGAAACCATTATTCTACTCAAAGATGCAGGAGTGAAGGTAGTTGTAGTGTCCAATTTCGACGTTCGGTTAAGGAAGCTATTGAAGGACCTAATGTTTGATGCTGTGATAATATCTTCTGAGGTTGGATATGAAAAACCAGATGAAAGGATATTTAAAGCTGCTCTAGAACAAGTCAATGTGGAGGCTGGTAAAGCAATCCACGTTGGTGATGATGAAAAAGCAGATAAAGATGGGGCAAATGCTGTTGGAATTGCTTGCTGGTTGTGGGGAAGTGAGATAAAGACATTCTCAGACATACAAAACAGAATACTTGTTCCTGAAACATAG 645 42.48 SVKRAYDALLLDAGGTLLQLAKPVEQTYAEIGRSYGLTAPPAQIKQGFKRAFTAPWPEKLRYLGDGRPFWKLVVSEATGCADSNYFEEVYQYYAEGDAWHLPEKAQETIILLKDAGVKVVVVSNFDVRLRKLLKDLMFDAVIISSEVGYEKPDERIFKAALEQVNVEAGKAIHVGDDEKADKDGANAVGIACWLWGSEIKTFSDIQNRILVPET 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12575226 12578744 + Bda007727.2 Bda11g01221 16329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01221 214 PANTHER - 2 213 - -
Bda11g01221 214 Gene3D - 10 195 IPR023214 -
Bda11g01221 214 Pfam haloacid dehalogenase-like hydrolase 6 189 - -
Bda11g01221 214 PANTHER F14L17.7 PROTEIN 2 213 - -
Bda11g01221 214 SUPERFAMILY HAD-like 6 198 IPR036412 -
Bda11g01221 214 Gene3D - 22 94 IPR044924 -
Bda11g01221 214 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 9 194 IPR011949 -
Bda11g01221 214 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 111 189 IPR006439 -
Bda11g01221 214 CDD HAD_dREG-2_like 105 211 - -
Bda11g01221 214 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 6 195 - -
Bda11g01221 214 SFLD Haloacid Dehalogenase 6 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01221 - - - cpap:110809172 359.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01531 Bda-Chr3:54234559 Bda11g01221 Bda-Chr11:12575226 1.30E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g897 . Blo16g01120 . Bda11g01221 Bpe13g01415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0595 Cone9ag0598 . . . . . . . Bda11g01221 . . . . . . . . . . . . Cpe07g00653 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006918 1 1 1 0 1 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01221 Bda_Chr11 FPKM 31.501568 34.499786 23.179613 25.370796 18.473249 18.079363 20.137674 29.341652 26.195381