Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01222 AGAGAGAGAGAATCCTACATGATCATGGATGGTGAAAATGTGACGCTCCGAAGGCCTAATTTTCCGCTTCAATTGTTAGAGAAGAAAGAAGAGCAACAGCAACAATCTTCAAGCTCCATCTATGGAGGAACTGGAGATCATCTTCAACCCTCTACAAACCCTACCATGGAACCACCCAAAAAGCCTCCCCCCAAAAGAACCTCTACCAAAGACCGCCACACTAAGGTCGACGGCCGCGGCCGACGGATCCGCATGCCGGCCGCCTGCGCCGCTAGGGTTTTCCAGCTCACCCGTGAACTTGGCCACAAGTCCGATGGCGAAACCATAGAGTGGCTCCTGCAGCAGGCCGAACCCTCTGTCATAGCTGCCACAGGAACCGGAACGATTCCGGCGAACTACACCTCGCTTAACATCTCTCTCCGTAGCTCCGGTTCCACCCTTTCAGCTCCGTCGCACTTGAGGAACAGTTATTTCAATCCGACCACCTTCGCCGAATCGCAGCTGAGAGCTAGGAGCGACTGGGAGAGAAACATAATGGAAGAGTCTCACCGGAGATCTTTGTTTCCTGCCGAAAACTCGCCGGCGTTCTTGAATTTCAAACACGAGCTACACGAGAATACCCTAGATGTGACGGATTCCGAGGTATGCGAAGGTAGAAAACAAGGGTTGACGCATAATCAAATGCCGGGAAACTACATGTTACAGTCAAGTACTGGTTCGATTCCGGCGACTCAGAGCCAAATTCCGGCTGCGCTTTGGATGATGACCAATCCAAGCACTCAAGTGATGACTGGTTCTGATCAGATATGGACATTTCCTTCTCATACTAACTCTAGTCTGTATAGAGGATCTGGATTACATTTTATGAACTTTTCTCCTCCCATGGCGGCCATGTTACCTCCACAACAACTCAACTCCCATGGAAATAGCTCCCTCACAGACACCCACTTGGGCGTTCTCGCCGCTCTCAACGCATTTCGGCCGATTCCGTCAAGTTCTCAGCCAGCATCGGAATCTACGGTTAGCGACTTGCATTTGCATAATCACGTTGGAGACTCGTGA 1062 50.85 RERESYMIMDGENVTLRRPNFPLQLLEKKEEQQQQSSSSIYGGTGDHLQPSTNPTMEPPKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYTSLNISLRSSGSTLSAPSHLRNSYFNPTTFAESQLRARSDWERNIMEESHRRSLFPAENSPAFLNFKHELHENTLDVTDSEVCEGRKQGLTHNQMPGNYMLQSSTGSIPATQSQIPAALWMMTNPSTQVMTGSDQIWTFPSHTNSSLYRGSGLHFMNFSPPMAAMLPPQQLNSHGNSSLTDTHLGVLAALNAFRPIPSSSQPASESTVSDLHLHNHVGDS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12583633 12584694 + Bda007728.1 Bda11g01222 16330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01222 353 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 346 IPR005333 GO:0003700
Bda11g01222 353 MobiDBLite consensus disorder prediction 331 353 - -
Bda11g01222 353 PANTHER TRANSCRIPTION FACTOR TCP23 18 346 - -
Bda11g01222 353 MobiDBLite consensus disorder prediction 63 82 - -
Bda11g01222 353 Pfam TCP family transcription factor 67 172 IPR017887 -
Bda11g01222 353 MobiDBLite consensus disorder prediction 18 84 - -
Bda11g01222 353 ProSiteProfiles TCP domain profile. 69 123 IPR017887 -
Bda11g01222 353 MobiDBLite consensus disorder prediction 27 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01222 - - - vvi:100260247 367.466
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01222 Bda-Chr11:12583633 Bda15g00574 Bda-Chr15:8942924 2.19E-98 dispersed
Bda10g00932 Bda-Chr10:43698140 Bda11g01222 Bda-Chr11:12583633 9.48E-46 transposed
Bda11g01222 Bda-Chr11:12583633 Bda06g00547 Bda-Chr6:7746366 5.76E-89 wgd
Bda11g01222 Bda-Chr11:12583633 Bda07g01383 Bda-Chr7:16657666 1.02E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16675 PF03634 TCP 2.50E-37 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01222 Bda_Chr11 FPKM 42.749176 43.472729 37.301804 36.764626 35.361961 36.100334 37.066849 26.713448 27.525101