Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01223 ATGGCTGATAATCAAAGAAGTGGTCCTGCTCAGAGAGATATAGAGCAGGCCATTACAGCTCTTAAGAAAGGCGCATATTTGTTGAAGTATGGACGAAGAGGGAAGCCAAAGTTCTGCCCGTTCAGACTTTCAAATGATGAATCTTTACTCATATGGTACTCTGGAAAGGAAGAGAAACACCTAAAAATAAGTCATGTTTCAAAGATTATTCCTGGACAATGCACTGCAATATTCCAGCAGTATCCTCGGCCAGAAAAGGAGTATCAGTCTTTTTCACTTTTATATGGTGATAGGTCCCTTGATTTGATTTGTAAAGACAAGGATGAGGCTGAAGTTTGGTTTGTTGGTCTTAAGGCATTAATTAATCGAGGAAACCTCCGCAGGTGGAGAAGTGATTATAGATGTAACAGTGTTTCATCAGATAGTCCACATACTCGTACCAAAAGAAATTCTCCTTCGATTACTCCATTTGATCCTGGAGATACTGAAGGGAGTCATTTTGAGAACATTTCACAAAGTAGACTAGGAAAAGCATTTTCTGAAATATTAACGTACACTGCTGTTACCAGAAGTATCAGTCAGCCGGAATTGGTCACCAATCCCTCTCTCTCAGCTGGGTCTGTAGATAACTCAAATGGGAGAAGTTCTGCATCTGACGGGTTTCGGATTAGTTTATCTAGTGCAGTAAGTTCTTCGAGCCAAGGTTCTTGTCCTGAAGATTTTGACTCCTTAGGTGATGTATTTATCTGGGGAGAAGGTATTGAGGCAGGATTGCTGGGGGCTGGCTTGCATAGAGTAGGGAGTTCAACCGATTCCAAGATGGATGCTCTTCTACCTAAGGCGTTGGAGTCATCAATGGTTTTAGATATCCATGGCATTGCTTGTGGTAGTAGACATGCTGTGATAGTCACCAGAAGAGGAGAGGTTTTCAGTTGGGGAGAGGAGTCAGGAGGGAGGCTTGGACATGGTGTAGATGCTGATGTTTCTCATCCAAAGATCATTAACAGTCTTAGTGGCATGAATATTGAATCAGTAGCTTGTGGGGAGTATCACACATGTGCTGTTACGTATTCAGGGGACCTTTACACATGGGGAGGTGGAACTCACCCTTTCGGTCTGCTTGGCCATGGTAGCGAAGTTAGTCATTGGATTCCGAAAAAAGTATGTGGTCGTATGGAGGGTATACATGTATCATATATTTCTTGTGGTCCTTGGCATACGGCTGTTGTGACATCTGCCGGGCAGTTATTCACATTTGGGGATGGATCATTTGGTGCTCTCGGACATGGCAATCGTAGTAACATAAATACCCCGCGAGAAATAGAAACTTTAAGAGGTCAAAGAATAACAAGAGTTTCTTGTGGTGTTTGGCATACTGCTGCTGTTGTCGAAGTAATTAATGAATCATCTAGCTCTGTTTCAGGTAAGTTTACATCTGGAAAACTGTTCACCTGGGGGGATGGAGATAAAGGACGTCTTGGGCATGGCGATAAAGAAACTAGACTAGTTCCTGAATGTGTAGTTGCATTAGCGAGTGAAAATGTTTGTCAGACTGCATGTGGTCTCAATCTCACTGTTGTTCTAACAACTTCAGGACAAGTATATACAATGGGAAGTGCCACTTATGGACAGTTAGGCAGTCCTATGGCTGATGGGATGATTCCCATGCGCGTCGAAGGGAGCCTTTCCAACAATTTTGTTGAAGCGATTTCATGTGGTTCTTATCATACTGCAGTTTTGACTTCCAAAGCTGAGGTTTATACTTGGGGAAAAGGTTCGAATGGACAACTAGGCCATGGGGATAATGATCATAGAAATACGCCCACTCTCGTTAATCCTCTTAAAGATAAGCAAGTAAAGAATGTGGTTTGTGGTTCAAACTTCACTGCTGTCATATGTCTTCATAAATGGGTAACTAGTGTGGATCATTCTATTTGCTCCTGCTGTCACAATGCATTCGGCTTTAGACGAAAGCGCCACAATTGTTACAACTGTGGGTTAGTATTTTGCAAAGCATGCAGTAGCAAGAAATCTCTGAAAGCTTCATTGGCTCCCAATACAAATAAGCCATATCGTGTATGTGATGAGTGTTTTAGTAAACTAAAGAAAGCTTCGGAAACTAATTCAGCCTTGCATAAGTCTAAAGTCAAAACTGGAAGTGTGCATAAATCTCACGACGTAGGAGATAGGGAGACATGGGCTCCTAAATTTCAAGGAACCCTCTCAAGACTTTCATCTTTTGGCTCTCTCAATAATACCGAAAGCAAGCATTTGAAGCATGATGTAGACCTTTCGAGATTGGCTTCCCGGGCAACATCTCCTATCTCAGGAATTTCTAGCCCATATATTTCATCTGAAGAACTTCTGCATTCGAAGAATACAAACGAAAGTTTAAGCCAGGAAATCATTATTCTAAGGGCTCAGGTATACTGA 2433 42.05 MADNQRSGPAQRDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYSGKEEKHLKISHVSKIIPGQCTAIFQQYPRPEKEYQSFSLLYGDRSLDLICKDKDEAEVWFVGLKALINRGNLRRWRSDYRCNSVSSDSPHTRTKRNSPSITPFDPGDTEGSHFENISQSRLGKAFSEILTYTAVTRSISQPELVTNPSLSAGSVDNSNGRSSASDGFRISLSSAVSSSSQGSCPEDFDSLGDVFIWGEGIEAGLLGAGLHRVGSSTDSKMDALLPKALESSMVLDIHGIACGSRHAVIVTRRGEVFSWGEESGGRLGHGVDADVSHPKIINSLSGMNIESVACGEYHTCAVTYSGDLYTWGGGTHPFGLLGHGSEVSHWIPKKVCGRMEGIHVSYISCGPWHTAVVTSAGQLFTFGDGSFGALGHGNRSNINTPREIETLRGQRITRVSCGVWHTAAVVEVINESSSSVSGKFTSGKLFTWGDGDKGRLGHGDKETRLVPECVVALASENVCQTACGLNLTVVLTTSGQVYTMGSATYGQLGSPMADGMIPMRVEGSLSNNFVEAISCGSYHTAVLTSKAEVYTWGKGSNGQLGHGDNDHRNTPTLVNPLKDKQVKNVVCGSNFTAVICLHKWVTSVDHSICSCCHNAFGFRRKRHNCYNCGLVFCKACSSKKSLKASLAPNTNKPYRVCDECFSKLKKASETNSALHKSKVKTGSVHKSHDVGDRETWAPKFQGTLSRLSSFGSLNNTESKHLKHDVDLSRLASRATSPISGISSPYISSEELLHSKNTNESLSQEIIILRAQVY 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12603990 12608628 + Bda007729.1 Bda11g01223 16331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01223 810 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Bda11g01223 810 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Bda11g01223 810 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Bda11g01223 810 PRINTS Chromosome condensation regulator RCC1 signature 579 600 IPR000408 -
Bda11g01223 810 PRINTS Chromosome condensation regulator RCC1 signature 290 303 IPR000408 -
Bda11g01223 810 PRINTS Chromosome condensation regulator RCC1 signature 521 539 IPR000408 -
Bda11g01223 810 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Bda11g01223 810 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
Bda11g01223 810 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Bda11g01223 810 SUPERFAMILY RCC1/BLIP-II 244 637 IPR009091 -
Bda11g01223 810 CDD PH_PLC_plant-like 12 122 - -
Bda11g01223 810 MobiDBLite consensus disorder prediction 136 158 - -
Bda11g01223 810 Gene3D - 477 648 IPR009091 -
Bda11g01223 810 Pfam FYVE zinc finger 636 702 IPR000306 GO:0046872
Bda11g01223 810 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Bda11g01223 810 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Bda11g01223 810 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 531 IPR000408 -
Bda11g01223 810 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 570 580 IPR000408 -
Bda11g01223 810 SUPERFAMILY FYVE/PHD zinc finger 636 710 IPR011011 -
Bda11g01223 810 MobiDBLite consensus disorder prediction 136 167 - -
Bda11g01223 810 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 763 - -
Bda11g01223 810 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 640 702 IPR017455 -
Bda11g01223 810 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Bda11g01223 810 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 584 635 IPR000408 -
Bda11g01223 810 Gene3D - 369 475 IPR009091 -
Bda11g01223 810 Gene3D - 196 368 IPR009091 -
Bda11g01223 810 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 763 - -
Bda11g01223 810 SMART fyve_4 635 703 IPR000306 GO:0046872
Bda11g01223 810 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Bda11g01223 810 Pfam Regulator of chromosome condensation (RCC1) repeat 479 528 IPR000408 -
Bda11g01223 810 Pfam Regulator of chromosome condensation (RCC1) repeat 358 410 IPR000408 -
Bda11g01223 810 Pfam Regulator of chromosome condensation (RCC1) repeat 585 632 IPR000408 -
Bda11g01223 810 Pfam Regulator of chromosome condensation (RCC1) repeat 531 580 IPR000408 -
Bda11g01223 810 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Bda11g01223 810 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Bda11g01223 810 SUPERFAMILY PH domain-like 13 121 - -
Bda11g01223 810 CDD FYVE_like_SF 646 698 - -
Bda11g01223 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 709 IPR013083 -
Bda11g01223 810 Gene3D - 13 127 IPR011993 -
Bda11g01223 810 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 400 410 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01223 - - - csv:101222790 1221.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00331 Bda-Chr9:4242249 Bda11g01223 Bda-Chr11:12603990 0 dispersed
Bda10g00373 Bda-Chr10:35262975 Bda11g01223 Bda-Chr11:12603990 1.63E-06 dispersed
Bda10g00412 Bda-Chr10:36339597 Bda11g01223 Bda-Chr11:12603990 3.94E-10 dispersed
Bda11g01223 Bda-Chr11:12603990 Bda13g01525 Bda-Chr13:38305052 0 dispersed
Bda11g01223 Bda-Chr11:12603990 Bda07g00759 Bda-Chr7:9020952 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g891 . . . Bda11g01223 Bpe13g01417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01223 . . . . . . . . . . . . Cpe07g00205 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008880 1 4 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01223 Bda_Chr11 FPKM 0.802724 0.754436 0.0 0.0 0.0 0.0 0.0 0.0 0.144385