Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01225 ATGGTGAGTCGGTCTTGTTTGGACTCGAGGGCGCTTTCAAGCTCTTGCCTTTCGGAAACTAACTGGCTTGTATCTACTTGTCCGATAAAAGTCGAAATGGCAAACGGGAAACGCCCATTCGGCGTGGATGAAATCGACAAATGCCAAATCGCGAAATCATCAAAGCTTTTCGATTCTGGGAAAAGAATAAAAACAGTGAAAAACCAGTGGGATGAAGAGGATTGTTTAGGGTCTTCTTTGGATTCAGATTATCTCATTTCTTCGATTGGGCGAGACAACTCAGTCAGCTGCCTGGTTCGCTGCTCGAGGTCGGATTATGGCTCGATCGCATATTTGAATCGGAGTTTTCGATCGTTAATTAGATCCGGCGAACTCTACAAGTTGAGGAGGCTAAATGGTGTTGTAGAACATTGGATATATTTTTCGTGCCACCTTCTTGAGTGGGAAGCTTTCGATCCAATTCGACATCGATGGATGCATCTGCCGAGAATGACTTCTAACGAATGTTTTATGTGTTCGGATAAGGAATCCTTGGCTGTTGGCACTGAGCTTCTAGTATTCGGCAAGGATTTGACTTCCCATGTCATTTACAGGTATAGTCTTTTGACCAATTCGTGGTCGTCGGGGATGATAATGAATAATCCGAGATGTTTGTTTGGGTCGGCCAGCCTCGGAGAGAAGGCAATTTTGGCCGGCGGGAGCGATTCAAGAGGGAAGATTTTGAATTCGGCAGAAATGTACAATTCCGAGACTCGAACTTGGGAGACCCTCCCTGGAATGAACAAACCGAGAAAGATGTGTTCGGCAGTGTTCATGGATGGAAAATTTTATGTAATTGGAGGAATCGGAGGGAGTAAATCGAATCTTCTAACGTGCGGAGAAGAATTCGATTTAGAAACGAAGACTTGGAGAGAAATTCCTAATATGTCTCCAGTTAGGACCGGGTTGGCCAGGGAATCAGAGGCGGTTTCGACGGCCGAAGCTCCACCTCTTGTTGCAGTCGTAAATAACGAACTTTATGCAGCCGATTATGCGGATATGGAGATAAGAAAATTCAATAAAGATAGAAAGATGTGGTTTACGGTCGGAAGATTGCCGGAAAGGGCAAACTCGATGAATGGATGGGGCCTGGCGTTCCGAGCATGTGGGGATCGTCTGATTGTCATCGGAGGGCCAAGGGCTACAGGCGAAGGCTTCATCGAACTGAATTCTTGGATTCCAAGCGAGGGACCTTCTCAGTGGAACTTGCTTGCCAGAAAGCGATCGGCCAATTTCGTGTACAATTGCGCCGTGATGGGATGCTGA 1305 46.36 MVSRSCLDSRALSSSCLSETNWLVSTCPIKVEMANGKRPFGVDEIDKCQIAKSSKLFDSGKRIKTVKNQWDEEDCLGSSLDSDYLISSIGRDNSVSCLVRCSRSDYGSIAYLNRSFRSLIRSGELYKLRRLNGVVEHWIYFSCHLLEWEAFDPIRHRWMHLPRMTSNECFMCSDKESLAVGTELLVFGKDLTSHVIYRYSLLTNSWSSGMIMNNPRCLFGSASLGEKAILAGGSDSRGKILNSAEMYNSETRTWETLPGMNKPRKMCSAVFMDGKFYVIGGIGGSKSNLLTCGEEFDLETKTWREIPNMSPVRTGLARESEAVSTAEAPPLVAVVNNELYAADYADMEIRKFNKDRKMWFTVGRLPERANSMNGWGLAFRACGDRLIVIGGPRATGEGFIELNSWIPSEGPSQWNLLARKRSANFVYNCAVMGC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12616074 12617378 - Bda007731.1 Bda11g01225 16333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01225 434 SUPERFAMILY Kelch motif 145 431 IPR015915 GO:0005515
Bda11g01225 434 Pfam Kelch motif 215 261 IPR006652 GO:0005515
Bda11g01225 434 Pfam Kelch motif 263 310 IPR006652 GO:0005515
Bda11g01225 434 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 3 434 - -
Bda11g01225 434 SMART kelc_smart 227 274 IPR006652 GO:0005515
Bda11g01225 434 SMART kelc_smart 183 226 IPR006652 GO:0005515
Bda11g01225 434 SMART kelc_smart 275 327 IPR006652 GO:0005515
Bda11g01225 434 Gene3D - 137 430 IPR015915 GO:0005515
Bda11g01225 434 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 3 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01225 - - - cit:102625928 659.448
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01463 Bda11g01225 CCT
Bda07g01463 Bda11g01225 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01464 Bda-Chr9:46454798 Bda11g01225 Bda-Chr11:12616074 1.90E-94 dispersed
Bda11g01225 Bda-Chr11:12616074 Bda14g00843 Bda-Chr14:6510058 0 dispersed
Bda01g01316 Bda-Chr1:48593454 Bda11g01225 Bda-Chr11:12616074 6.58E-80 transposed
Bda10g01050 Bda-Chr10:44594382 Bda11g01225 Bda-Chr11:12616074 0 wgd
Bda11g01225 Bda-Chr11:12616074 Bda07g01463 Bda-Chr7:27244450 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g886 . Blo16g01122 . Bda11g01225 Bpe13g01419 Bpe10g00862 Bma14g01637 Bma15g00165 Cmo04g01725 Cmo18g01186 . Cma18g01163 . Car18g01072 . Cpe09g00167 Cpe01g01456 Bhi07g01584 Tan04g1095 . . . . . Cla05g02456 Cam05g2642 Cec05g2675 Cco05g2712 Clacu05g2645 Cmu05g2499 Cre05g2613 Cone13ag0964 Cone19ag0956 Cone6ag0600 Cone9ag0605 Lsi04g00439 Csa05g02435 Chy10g00988 Cme10g00430 Blo06g00901 . Bda07g01463 Bda11g01225 Bpe11g01636 . . Bma06g00678 . . . Cma04g01646 . Car04g01687 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003256 3 4 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 0 1 1 1 1 3 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01225 Bda_Chr11 FPKM 13.328631 13.998384 13.061262 12.570924 15.561892 10.536108 15.10912 16.45817 16.795162