Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g01227 | ATGACTAGCAATTGGATGGCTTTCTTCCCTGCAAATTTCATGCCACAAGCTCCCCATGAAGATGAACATCAACCTCCCACTACTCTTAACCCAATTCTTCACTCATGTACTCCTCAAGACTTTCATGGTATTCTCTCTCTCTATAATTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAACCTTCAACTTGTGGTTGCAGGAGTGACATCGTTTCTAGGAAAGAGATCCAGGTCGTTTTCGGGAATTGAAATGGGGGAAGAAGCAAACAATGGGGAGGACGATTTGTCGGACGATGGATCACTTGCAGGAGAGAAGAAGAGGAGGCTTAATATGGAGCAGGTGAAAACTCTTGAGAAGAACTTCGAGCTGGGAAATAAGCTGGAGCCCGAGAGAAAAATGCAGTTGGCTCGAGCTCTTAATCTGCAGCCACGGCAGATTGCGATTTGGTTTCAGAACAGAAGAGCAAGGTGGAAGACGAAGCAGTTGGAGAAAGATTATGATCTTCTTAAACGACAGTTTGAAGCCATTAAAGCCGATAACGAAGCTCTACAAACCCAGAATCAAAAGCTTCAGGCAGAGATTATGGGTCTGAAAAATAGAGAACCAACCGAATCGATCAATCTGAACAAAGAAACAGAAGGATCATGCAGCAATCGGAGCGAGAACAGCTCCGACATAAAACTGGATATCTCCAGAACACCAGCCATTGATAGTCCTTTACCCACGAGCAGACCTTTATTTCCGGCCGCAATTAGAGCTCCCGCTGTCGCTCAGCTCTTTCAGAACCCATCGAGATCTGAACTCCATTGCCATAAAGTAGATCAAATAGGCAAAGAAGAAAGCCTGAGCAACATGTTTTGCGGGATCGAGGATCAGTCCGGCGGACTGTGGCCATGGTTGGAGAATCAACATTTTAAT | 924 | 45.13 | MTSNWMAFFPANFMPQAPHEDEHQPPTTLNPILHSCTPQDFHGILSLYNYFSLSLSLSLSLNLQLVVAGVTSFLGKRSRSFSGIEMGEEANNGEDDLSDDGSLAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNEALQTQNQKLQAEIMGLKNREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLPTSRPLFPAAIRAPAVAQLFQNPSRSELHCHKVDQIGKEESLSNMFCGIEDQSGGLWPWLENQHFN | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12694178 | 12695424 | + | Bda033141 | Bda11g01227 | 16335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g01227 | 308 | Gene3D | - | 100 | 168 | - | - | |
Bda11g01227 | 308 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 4 | 53 | IPR045224 | GO:0003700 | |
Bda11g01227 | 308 | CDD | homeodomain | 107 | 163 | IPR001356 | GO:0003677 | |
Bda11g01227 | 308 | SMART | HOX_1 | 105 | 166 | IPR001356 | GO:0003677 | |
Bda11g01227 | 308 | MobiDBLite | consensus disorder prediction | 199 | 228 | - | - | |
Bda11g01227 | 308 | ProSiteProfiles | 'Homeobox' domain profile. | 102 | 162 | IPR001356 | GO:0003677 | |
Bda11g01227 | 308 | Pfam | Homeobox associated leucine zipper | 162 | 202 | IPR003106 | GO:0006355|GO:0043565 | |
Bda11g01227 | 308 | MobiDBLite | consensus disorder prediction | 210 | 228 | - | - | |
Bda11g01227 | 308 | ProSitePatterns | 'Homeobox' domain signature. | 137 | 160 | IPR017970 | GO:0000981|GO:0006355 | |
Bda11g01227 | 308 | SUPERFAMILY | Homeodomain-like | 105 | 164 | IPR009057 | - | |
Bda11g01227 | 308 | Coils | Coil | 154 | 202 | - | - | |
Bda11g01227 | 308 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 | 4 | 53 | - | - | |
Bda11g01227 | 308 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 | 67 | 308 | - | - | |
Bda11g01227 | 308 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 67 | 308 | IPR045224 | GO:0003700 | |
Bda11g01227 | 308 | Pfam | Homeodomain | 107 | 160 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g02167 | Bda11g01227 | CCT | |
Bda07g01460 | Bda11g01227 | CCT | |
Bda01g02167 | Bda11g01227 | BCT | |
Bda07g01460 | Bda11g01227 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g01227 | Bda-Chr11:12694178 | Bda04g00102 | Bda-Chr4:2183130 | 3.31E-38 | dispersed | |
Bda14g01299 | Bda-Chr14:14333252 | Bda11g01227 | Bda-Chr11:12694178 | 2.00E-23 | dispersed | |
Bda01g02167 | Bda-Chr1:57581698 | Bda11g01227 | Bda-Chr11:12694178 | 0 | wgd | |
Bda11g01227 | Bda-Chr11:12694178 | Bda07g01460 | Bda-Chr7:27137122 | 1.20E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16677 | PF00046 | Homeodomain | 7.90E-15 | CL0123 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g01227 | K09338 | - | qsu:112032056 | 454.136 |