Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01231 ATGCAGCGGCTACACTTGCTATCTTCTTCTTTTTCTTCTTCATTTGCTGCTCCTCAAAACCCTGAAACTTGTCCTTTCCTTAAGCTTTCCTCCAACTATCCGTCTAGAAGCTTCTTTCTCAACTTCAATGCCCACCGGCCTCTTCCAACGCACTCCACAAGCTGGAAGCTCTCTGTGAAATGCCGGTACTCTGAGTACTTCGACCAGCAGCAGAAGAAGCAGTCTGGATTCGACGCCGGAACTTCTCCGAATAACAATTCTGCTCCACAGTCTCGGCCTGGAGCTTCTGTAGCGTTGCCAACTAGGTACTTCGTGGGTCATTCAATATACAAAGGGAAGGCAGCTCTTACGGTGGAGCCACGGGCGCCAGAGTTTACTTCTCTAGATTCAGGAGCGTTCAAACTATCAAAGGAGGGCGTTGTTGTTCTTCAGTTTGCGCCCGCAGCTGGTGTTCGTCAATATGATTGGAGCAAAAAACAGGTATTCTCTTTGTCAGTGACTGAAATTGGGAGTCTTGTTGCCCTTGGCCCAAGAGATTCGTGTGAATTTTTCCACGACCCTTTTAAAGGAAAAAGTGAGGAAGGGAAAGTTAGGAAGGTATTGAAAGTGGAGCCCCTTCCAGATGGTTCTGGTCATTTCTTCAACATCAGTGTTCAGAACAAGCTTATCAACATGGACGAGAGTATTTATATTCCTGTCAGCAAAGCAGAATACGCTGTACTTGTCTCAGCATTCAATTTTATCTTACCATATCTTCTAGGATGGCATGCCTACGCCAATTCCATCAAGCCCGAAGATTCGAACCGTGTTAATAGCGCCAATTCTAGGTATGGCGACTACGAATGGAACAAGTAG 855 46.2 MQRLHLLSSSFSSSFAAPQNPETCPFLKLSSNYPSRSFFLNFNAHRPLPTHSTSWKLSVKCRYSEYFDQQQKKQSGFDAGTSPNNNSAPQSRPGASVALPTRYFVGHSIYKGKAALTVEPRAPEFTSLDSGAFKLSKEGVVVLQFAPAAGVRQYDWSKKQVFSLSVTEIGSLVALGPRDSCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNISVQNKLINMDESIYIPVSKAEYAVLVSAFNFILPYLLGWHAYANSIKPEDSNRVNSANSRYGDYEWNK 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12838065 12840618 - Bda007740.1 Bda11g01231 16339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01231 284 MobiDBLite consensus disorder prediction 74 95 - -
Bda11g01231 284 Pfam Whirly transcription factor 109 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bda11g01231 284 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 47 283 - -
Bda11g01231 284 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 47 283 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bda11g01231 284 MobiDBLite consensus disorder prediction 74 94 - -
Bda11g01231 284 Gene3D Transcriptional Coactivator Pc4; Chain A 96 274 IPR009044 GO:0003677|GO:0006355
Bda11g01231 284 SUPERFAMILY ssDNA-binding transcriptional regulator domain 102 282 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01231 Bda-Chr11:12838065 Bda03g00364 Bda-Chr3:3055279 2.06E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16678 PF08536 Whirly 5.90E-61 CL0609 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01231 - - mnt:112091579 372.089