Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01233 ATGGCGGAATTTGGAGTTAAGGTACTTGTTTTGTTGTTACTGGCTATGGTAGCCAACGCTAACATCGGAGAGTTTGATGATTACTGGAAAAATCGAGCCGCGGAAGCCAAATTGGCGGCTCTTGACGCATACGATCCTAACCCGGAGGCCGTTACCGATAGTTTCAACGCTCAAGTTGGCAAAGCAATTGCGGGAACGAACACCACGAGAAGAAATCTGAGGAAAAACAAAGGCCCATGCAGGGCGACGAACCCCATTGACAGGTGTTGGAGGTGTGATCCAAACTGGGCGAACAACCGGAAGAAGCTAGCCAGCTGCGTTCTGGGCTTCGGCCGGAGGACCTTCGGAGGAAAATACGGCCGATATTACGTCGTCACTGACTCTTCCGACTCTGATCTACTCAACCCTAAACCAGGAACTCTCCGGCACGCAGTGATTCAGAATCAACCCCTCTGGATCATCTTCGCCAGAAGCATGGTAATTCGCCTGACCCAAGAGCTAATGGTGAACAGCCATAAAACCATTGACGCTCGAGGAGTCAACGTCCATATCGCGTTCGGAGCCGGAATTACGGTCCAGTTTGTGAAGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTGCCGGCACCGGCGGACTAATCAGAGATTCCGTCGACCATTATGGGTTTAGAACAAAGAGTGATGGCGATGGAATTTCAATCTTCGGAGCTTCAAATATTTGGATCGACCACATTTCCATGTCCAACTGCCAAGACGGACTAATCGACGCTATCATGGGGTCTACTGCTATCACCATCTCCAACTGTCACTTTACTCACCATAACGAGGTGATGCTGTTCGGAGCGAGCGACAGCTATTCCGGCGATGCAATAATGCAAGTGACGGTGGCTTTCAACCATTTCGGAAGAGGGTTAGTGCAGAGAATGCCGAGGTGCAGATGGGGCTTCTTCCACGTCGTTAACAATGACTACACCCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAGGGGAATCGTTTTATTGCTCCTCACAATGCAGCTGCTAAAGAGGTGACGAAGAGGGATTATGCAACACAAGAGACGTGGAAAAACTGGATATGGAGATCAGAGGGGGATCTACTAGTGAATGGAGCATTCTTTGTGAGATCAGGAGATCAAAGTAGGAGGAGGCCATTTCACAGGCTGGATATGATCTCCTACAAGCCTGGGTCTTTCGTCAGCCGGCTAACTCGCTTTTCCGGAGCCCTCGATTGCTTCATCGGCCGGCCGTGT 1299 50.5 MAEFGVKVLVLLLLAMVANANIGEFDDYWKNRAAEAKLAALDAYDPNPEAVTDSFNAQVGKAIAGTNTTRRNLRKNKGPCRATNPIDRCWRCDPNWANNRKKLASCVLGFGRRTFGGKYGRYYVVTDSSDSDLLNPKPGTLRHAVIQNQPLWIIFARSMVIRLTQELMVNSHKTIDARGVNVHIAFGAGITVQFVKNVIIHGLHIHDIVAGTGGLIRDSVDHYGFRTKSDGDGISIFGASNIWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYSGDAIMQVTVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYATQETWKNWIWRSEGDLLVNGAFFVRSGDQSRRRPFHRLDMISYKPGSFVSRLTRFSGALDCFIGRPC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12847615 12849534 - Bda033145 Bda11g01233 16341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01233 433 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Bda11g01233 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Bda11g01233 433 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Bda11g01233 433 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Bda11g01233 433 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Bda11g01233 433 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Bda11g01233 433 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Bda11g01233 433 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Bda11g01233 433 PANTHER PECTATE LYASE 13 433 - -
Bda11g01233 433 SUPERFAMILY Pectin lyase-like 84 424 IPR011050 -
Bda11g01233 433 PANTHER PECTATE LYASE 18-RELATED 13 433 IPR045032 GO:0030570
Bda11g01233 433 SMART amb_all 158 355 IPR002022 -
Bda11g01233 433 Gene3D - 83 426 IPR012334 -
Bda11g01233 433 Pfam Pectate lyase 168 349 IPR002022 -
Bda11g01233 433 Pfam Pectate lyase, N terminus 21 73 IPR007524 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02254 Bda11g01233 CCT
Bda01g02254 Bda11g01233 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01233 Bda-Chr11:12847615 Bda02g00603 Bda-Chr2:46877864 4.42E-170 dispersed
Bda01g02260 Bda-Chr1:58489689 Bda11g01233 Bda-Chr11:12847615 2.67E-61 wgd
Bda01g02254 Bda-Chr1:58299206 Bda11g01233 Bda-Chr11:12847615 0 wgd
Bda11g01233 Bda-Chr11:12847615 Bda13g01679 Bda-Chr13:40172820 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01233 K01728 - csv:101206497 702.975