Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01234 ATGGGAAAGGGCCCAGGTCTCTACTCCGACATCGGCAAGAAAGCCAGAGATCTTCTCTATAAGGACTATCAGGGCGATCACAAGTTCACCATTACTACCTACACGGCTGCTGGAGTTGCTATCACTTCATCTGGGATTAAGAAAGGCGACCTATTTTTGGCTGATGTGAGCACTCAGTTGAAGAACAAGAACATCACGACTGATGTAAAAGTTGATACTAACTCCAATCTCCTTACAACAATTACTGTTGATGAACCTGCTCCTGGGCTGAAAACAATCTTTAGCTTCACTGCTCCTGATCAGAGATCTGGCAAGGTTGAACTTCAGTATCACCATGAGTATGCTGGAATAAGCACTAGCCTTGGATTGACTGCTAGTCCGATTGTTAATTTCTCTGGTGTGATTGGAAATGGCTCACTTGCTCTAGGGACAGATTTGTCATTTGACACAGCATCCGGAAACATTACCAAGTTGAATGGAGGGTTGAGTTACACACTTTCTGATTTAATTGCATCCTTGACAGTGAATGACAAGGGTGACACCCTTAATGCATCTTACTACCATCTTGTTAGCCCCCTGACTAACACAGCAGTTGGCGCAGAGCTATCCCATAGTTTCTCAAGTAATGAAAACACCCTCACAATCGGAACTCAACACGCCCTTGACCCATTAACTTCGGTGAAGGCTCGGGTGAACAACTATGGCAGGGCAAGTGCTCTCATCCAGCATGAATGGCGTCCAAAATCCCTCTTTACCATCTCTGGAGAAGTGGACACTCGTGCCATTGAAAAGAGCGCTAAGATTGGTCTAGCCTTGTCTCTAAAGCCATAG 831 45.37 MGKGPGLYSDIGKKARDLLYKDYQGDHKFTITTYTAAGVAITSSGIKKGDLFLADVSTQLKNKNITTDVKVDTNSNLLTTITVDEPAPGLKTIFSFTAPDQRSGKVELQYHHEYAGISTSLGLTASPIVNFSGVIGNGSLALGTDLSFDTASGNITKLNGGLSYTLSDLIASLTVNDKGDTLNASYYHLVSPLTNTAVGAELSHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALSLKP 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12850646 12853346 + Bda007742.1 Bda11g01234 16342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01234 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741|GO:0008308|GO:0098656
Bda11g01234 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
Bda11g01234 276 Gene3D Porin 2 275 IPR023614 -
Bda11g01234 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741|GO:0008308|GO:0098656
Bda11g01234 276 PANTHER MITOCHONDRIAL OUTER MEMBRANE PROTEIN PORIN 3 1 276 - -
Bda11g01234 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01234 K15040 VDAC2; voltage-dependent anion channel protein 2 - qsu:112039408 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01234 Bda-Chr11:12850646 Bda11g01479 Bda-Chr11:21536237 2.19E-94 dispersed
Bda11g01234 Bda-Chr11:12850646 Bda12g00530 Bda-Chr12:8297135 8.29E-162 wgd
Bda11g01234 Bda-Chr11:12850646 Bda13g01678 Bda-Chr13:40166050 4.57E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g853 . Blo16g01132 . Bda11g01234 Bpe13g01431 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0610 . . . . . . . . Bda11g01234 . . . Bma06g00659 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001404 4 2 2 6 4 2 3 2 2 2 1 2 2 2 2 2 2 5 1 2 2 2 2 2 2 2 2 3 4 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01234 Bda_Chr11 FPKM 5.36969 5.038715 9.640548 9.124552 9.268833 10.065066 10.765399 12.629853 13.637332