Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01236 TCAATTTCAGCTTCCAAATCGATGATAAACCAGGAAAATAAGAATCCAAGTGAGAGCGAAGAAGAGTCAATTTTCCCGCCGGACGAGAAAGAAGAAAGCTACGGAGAAGATGACGACGGAGGTCTTCGTCAACCCGGAAAGAAGAGAAGATTGACGGTCAATCAAGTGAAGCATCTGGAGAAACATTTCGAAGTAGAAAGTAAGCTGGAACCAGAGAGAAAAGTGGGGCTGGCTAAAGAACTGGGTTTACAGCCGAGACAAGTCGCGATCTGGTTTCAGAACAGACGTGCCCGGTTGAAGACAAAACAGCTGGAGAAAGACTACGGATCGTTAAAGCCTGACTATGATAAACTCATGGCCGATTATGTTAATCTGCTCAAGCAAAATGAAGATTTGAAAACAAAGATCAATGAAATGGAAGAAGAATTGCTCAAGAGGGAGAAGAGGAGGAAGAAGATGGGTAATTTAGAACAGGTTGAAGCCATGGCCGTTCAAGTCGCAGAGCTTGAAAACCTGTGGCCAAATTCAGACTCTAATCCGGTCTGTAACTCAGCAATGGCGACGAGAGGCAAACAAGAAGAGGCAAGCTCAGACAAGAGCGATACGTTCGATTCAGTGAGTCCATTCAACACAGAGAACCATTCGTCTTTAATGGAGGCTGGAAATTCGGCGCAGTCGGATTTCACGCAAAACGAAGAAGACGACTTCACCAGAACCCTTTTTCCGCAGTTTTTCCGGAAGGTCGAAGAAGAGGAAGAGTTTTCAAAGAGTTGTGTCCTTGGATTTCCAGATGACGAGCAGAGGTTCTGCTTTTGGCCTTACTTCTCTTCAGAAATATGA 840 44.88 SISASKSMINQENKNPSESEEESIFPPDEKEESYGEDDDGGLRQPGKKRRLTVNQVKHLEKHFEVESKLEPERKVGLAKELGLQPRQVAIWFQNRRARLKTKQLEKDYGSLKPDYDKLMADYVNLLKQNEDLKTKINEMEEELLKREKRRKKMGNLEQVEAMAVQVAELENLWPNSDSNPVCNSAMATRGKQEEASSDKSDTFDSVSPFNTENHSSLMEAGNSAQSDFTQNEEDDFTRTLFPQFFRKVEEEEEFSKSCVLGFPDDEQRFCFWPYFSSEI 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12866185 12867310 + Bda007744.1 Bda11g01236 16344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01236 279 SUPERFAMILY Homeodomain-like 34 104 IPR009057 -
Bda11g01236 279 Pfam Homeodomain 47 100 IPR001356 GO:0003677
Bda11g01236 279 SMART HOX_1 44 106 IPR001356 GO:0003677
Bda11g01236 279 Gene3D - 40 108 - -
Bda11g01236 279 ProSitePatterns 'Homeobox' domain signature. 77 100 IPR017970 GO:0000981|GO:0006355
Bda11g01236 279 MobiDBLite consensus disorder prediction 185 205 - -
Bda11g01236 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5-LIKE 4 272 - -
Bda11g01236 279 PRINTS Lambda-repressor HTH signature 73 82 IPR000047 GO:0003677
Bda11g01236 279 PRINTS Lambda-repressor HTH signature 82 98 IPR000047 GO:0003677
Bda11g01236 279 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Bda11g01236 279 MobiDBLite consensus disorder prediction 1 53 - -
Bda11g01236 279 Coils Coil 115 149 - -
Bda11g01236 279 Pfam Homeobox associated leucine zipper 102 143 IPR003106 GO:0006355|GO:0043565
Bda11g01236 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 272 IPR045224 GO:0003700
Bda11g01236 279 CDD homeodomain 45 103 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01236 - - K09338 zju:107428804 239.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01236 Bda-Chr11:12866185 Bda15g00022 Bda-Chr15:1565106 5.34E-39 dispersed
Bda01g02263 Bda-Chr1:58618346 Bda11g01236 Bda-Chr11:12866185 7.21E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017230 2 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16679 PF00046 Homeodomain 1.10E-15 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01236 Bda_Chr11 FPKM 1.327836 1.93949 1.291188 1.119361 10.788355 11.867782 12.293145 0.980957 0.909052