Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01241 ATGGAGGTTTTCAATAAAACCATGGCGGTTAAGCTCCGTAGCCATCTGGGTAAATATTTGATACCCGACGACGACAAAGAAACAGTTCGGCTGACCCGAAACGGCGACTCTCATAAAGCGATCTGGGTAGTCGAAGTAGTGGAAGAAAAGAGCCATAAAATCCGACTGAAGAACTGCTATGGAAGATACCTCAAAGCATCAGATTCGGATTTTTCCATTGGAATGTCGGGCAAAAAAGTAGTTCAGCACTCGCCGGCGAAGCCATCCGGGCTGATGATTCAGTGGGAGCCGATTCGGGAAGGATATCAAGTAAAGCTCAGGAGCTGTTCCGGAACGTTTCTCCTAGCGATCGGCGGAACGCCCCCGTGGAGAAACTCCGTAACCCACGATGAACCGTACATCTCTTCAACTCAGAAATGGATCTTGTGGGATGTGGACGCCGTCGAAGCTCCGGGGAAGGAGTCAATTTTAAGTTCTGTAAGGTCGATTTCGGATGAGTTTACGGGTTCAGAGCCTAATTCGCCGGCAAAAGCTTCCGGAGAAAAGTCTTCAAAAGGAATTTCAAAACAGGTCAATGTCTCCTCCGGAAAATTCCGATCTGGCATGGACCTCTTTAACAACGCTAAGGCGGTGCGCCTTCGTAGCCGCCACGACAAGTATTTAACGGCGGATGACGATGAGGAATCGGTGACCCAAGATCGAATCGGATCTTCCAAGAACGCCCGATGGACAGTCGAGTTTGTGTCCGGATCCGAATCCGCAGTCCGGTTCAAGAGCTGCTATGGGAAGTATCTCACCGCCTCGAATCAGCCGTTTCTGCTCGGAGTGACCGGCCGGAAAGTGCTCCAGACTCTTCCGAAGCGGCTCGATTCATCGGTGGAGTGGGAGCCAGTGAGAGAAGGGGTTCAGATTATGCTTAAAACTCGGTATGGAAATTTCTTGAGGGCAAATGGGGGAGTTCCGCCATGGCGAAACTCTATAACTCACGACGTTCCTCATCGGACTGCTACTCAAGATTGGATTGTCTGGTCTGTCGATGTTGTCGAAATCGAAGTTAAATCTCCTGGTTCTGTACAGCCGAGTCAGCCCGTTTCACACTCGGACTCTTCGGACCATCTGGGCTACAATTCACCCTCCTCGGATTCCTTCAAATCCGACCAACTTTCAAGATCAGAGTCTATGGATTCCGGTCGTATTTCTCCACCGAAATCCGATGGAAGAACGATAAATTATCACGTGCTTAACGAGAATGATAAGGCCGAGGAGGGCTACTCCTTTACGTTTAAAGGAAACGGGGTTGAAGAATTGACTCGGAAGTTGGAGGAAGAGACCGGCTTAGATGATATTATTGTGTGTACTCGTAATCCGCTCAACGGAAATCCTTATCCCCTTCGTTTGCACCTTCCTCCAAACAATGCACCGATGAATGTTGTCGTTGTTTTGAAGTCTTCTAAAGCGGCTAGAGATTTTGCCAACCAAGGCTTGATCTAA 1491 49.03 MEVFNKTMAVKLRSHLGKYLIPDDDKETVRLTRNGDSHKAIWVVEVVEEKSHKIRLKNCYGRYLKASDSDFSIGMSGKKVVQHSPAKPSGLMIQWEPIREGYQVKLRSCSGTFLLAIGGTPPWRNSVTHDEPYISSTQKWILWDVDAVEAPGKESILSSVRSISDEFTGSEPNSPAKASGEKSSKGISKQVNVSSGKFRSGMDLFNNAKAVRLRSRHDKYLTADDDEESVTQDRIGSSKNARWTVEFVSGSESAVRFKSCYGKYLTASNQPFLLGVTGRKVLQTLPKRLDSSVEWEPVREGVQIMLKTRYGNFLRANGGVPPWRNSITHDVPHRTATQDWIVWSVDVVEIEVKSPGSVQPSQPVSHSDSSDHLGYNSPSSDSFKSDQLSRSESMDSGRISPPKSDGRTINYHVLNENDKAEEGYSFTFKGNGVEELTRKLEEETGLDDIIVCTRNPLNGNPYPLRLHLPPNNAPMNVVVVLKSSKAARDFANQGLI 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12930478 12933445 - Bda007752.1 Bda11g01241 16349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01241 496 MobiDBLite consensus disorder prediction 355 398 - -
Bda11g01241 496 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 181 - -
Bda11g01241 496 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 196 486 - -
Bda11g01241 496 MobiDBLite consensus disorder prediction 354 410 - -
Bda11g01241 496 Gene3D - 4 147 - -
Bda11g01241 496 Gene3D - 210 329 - -
Bda11g01241 496 SUPERFAMILY Actin-crosslinking proteins 206 348 IPR008999 -
Bda11g01241 496 SUPERFAMILY Actin-crosslinking proteins 6 147 IPR008999 -
Bda11g01241 496 Pfam Domain of unknown function (DUF569) 1 143 IPR007679 -
Bda11g01241 496 Pfam Domain of unknown function (DUF569) 202 343 IPR007679 -
Bda11g01241 496 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 181 - -
Bda11g01241 496 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 196 486 - -
Bda11g01241 496 MobiDBLite consensus disorder prediction 165 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01241 - - - qsu:112040043 636.336
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02249 Bda11g01241 CCT
Bda01g02249 Bda11g01241 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02249 Bda-Chr1:58274368 Bda11g01241 Bda-Chr11:12930478 0 wgd
Bda10g01038 Bda-Chr10:44456831 Bda11g01241 Bda-Chr11:12930478 0 wgd
Bda11g01241 Bda-Chr11:12930478 Bda13g01676 Bda-Chr13:40161379 4.69E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g835 . Blo16g01138 Bda01g02249 Bda11g01241 Bpe13g00469 . . Bma15g00173 Cmo04g01696 Cmo18g01211 . Cma18g01191 . Car18g01098 . Cpe09g00140 Cpe01g01431 . . . . . . . . . . . . . . Cone13ag0988 Cone19ag0981 Cone8ag0625 Cone12ag0608 . Csa05g02398 Chy10g00958 Cme10g00467 Blo06g00892 . . Bda11g01241 . . Bma01g00078 Bma06g00656 . . . Cma04g01618 . Car04g01660 . . Cpe07g00237 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000505 4 4 2 5 3 3 5 3 3 4 3 3 5 4 4 5 3 4 5 3 4 4 3 4 3 3 3 6 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01241 Bda_Chr11 FPKM 34.042477 37.352581 22.910629 22.323153 25.513184 27.032526 23.104057 21.148384 20.601789