Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01242 ATGGATCCACCTTCATTGATCGATGAAGAATCGTATCCTAGTCCAAATGTACCGTCTTACAATCTGGCCGAGATCTGGCAGCTCCAGATGAACGGCTATGCGGTTATTGTCGAATCTGGCGTCGGATTGGGCGAGTCGGGGGCTCAGTTCGCCCCCAATGTGGTCCGATTGGAGCAAGTTTCTGCTGTGAATCACGGACATTCGGCCAATGTCAAGGTTCAGGATGGTCCGATGAAGCGACGGGAGCCAGACGGTGATTCTATCAGCCGTCTCCCCTCCGGCAATAGCCCAGCGGCGCAGAATGATAATAAGAAACGGCTTAAAACAGCAGGGAGTAGGGAGATGAACTACTACGAATCAAAAACTGGAGCAGAAGTGCAAAACTCTCAGCCGCCAAAGCAGGATTGCATCCATGTTCGAGCAAGAAGGGGCCAAGCTACTGACAGCCATAGTTTGGCTGAAAGGGCTAGAAGAGAGAAGATAAGTGAGAGGATGAAAATTCTGCAGGATTTGGTCCCAGGTTGCAGCAAGGTCAACGGAAAAGCGATGGTGCTCGATGAGATTATCAACTACGTTCAATCGTTGCAGAGTCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTCAATTCAAGAGTGAGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATGCAAGTCCAAATTCACTGTGTTTCACTTGCAATTTCCTTTGA 714 48.74 MDPPSLIDEESYPSPNVPSYNLAEIWQLQMNGYAVIVESGVGLGESGAQFAPNVVRLEQVSAVNHGHSANVKVQDGPMKRREPDGDSISRLPSGNSPAAQNDNKKRLKTAGSREMNYYESKTGAEVQNSQPPKQDCIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCSKVNGKAMVLDEIINYVQSLQSQVEFLSMKLEAVNSRVSPGIEVFPPKDASPNSLCFTCNFL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12947673 12948952 + Bda007753.1 Bda11g01242 16350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01242 237 PANTHER BNAC05G07950D PROTEIN 1 226 - -
Bda11g01242 237 Coils Coil 192 212 - -
Bda11g01242 237 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Bda11g01242 237 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 226 IPR024097 GO:0006355
Bda11g01242 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Bda11g01242 237 MobiDBLite consensus disorder prediction 66 111 - -
Bda11g01242 237 Gene3D - 142 215 IPR036638 GO:0046983
Bda11g01242 237 SMART finulus 151 201 IPR011598 GO:0046983
Bda11g01242 237 CDD bHLH_AtBPE_like 135 220 - -
Bda11g01242 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 212 IPR036638 GO:0046983
Bda11g01242 237 MobiDBLite consensus disorder prediction 89 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01242 - - - csv:101209222 231.106
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02247 Bda11g01242 CCT
Bda01g02247 Bda11g01242 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01242 Bda-Chr11:12947673 Bda15g00591 Bda-Chr15:9105510 5.48E-58 dispersed
Bda01g02276 Bda-Chr1:59116207 Bda11g01242 Bda-Chr11:12947673 3.10E-66 wgd
Bda01g02247 Bda-Chr1:58264061 Bda11g01242 Bda-Chr11:12947673 4.97E-106 wgd
Bda11g01242 Bda-Chr11:12947673 Bda06g00566 Bda-Chr6:7945300 7.77E-45 wgd
Bda11g01242 Bda-Chr11:12947673 Bda07g01581 Bda-Chr7:29316180 1.07E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g814 Blo01g00412 . Bda01g02247 Bda11g01242 Bpe13g00471 . Bma14g01759 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0995 Cone19ag0986 . . . . . . . Blo11g00894 . Bda11g01242 . . Bma01g00077 . . . . . . . . . Cpe07g00608 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014432 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 0 0 0 21
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16680 PF00010 HLH 2.00E-08 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01242 Bda_Chr11 FPKM 6.844444 9.322274 7.04225 6.316463 5.209886 3.893668 6.299698 3.81951 3.684156