Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01246 AGCTCTGGGCAACCACAAATGATGGGAGGAGGAAATACACACAAGCTAACAACAAATGATGCTCTGACATATCTTCAGGCAGTGAAGGAAATTTTTCAAGACAACAAGGAAAAATATGACGACTTCCTTGATGTCATGAAAGATTTTAAAGCCCAAAGAATCGATACTGCGGGTGTCATAGTGAGAGTAAAAGAATTATTCAAAGGTCATCCAGACCTAATTTTTGGCTTCAACACCTTCTTGCCCAAAGGATATGAGATTACTCTTCCACTCAATGATGATAAACGCACACAAAAGAAGCCTGTCGCTTTTGAAGAAGCTATCAATTTTGTAAATAAGATTAAGACACGTTTTAAAGGAGATGATCATGTTTACAAATCATTTTTAGACATTCTGAATATGTACAGAAAGGAAAGCAAGCTTATCTGCGAGGTCTACCGAGAGGTTTCTTTACTTCTCAATGGTCATGCTGACCTGTTAGCAGAGTTTTCTAATTTCTTACCTGATTCATCGGGGAAGTCCTCCACTCAATGTGCTCCATCTAGTAGGAATTCGAATCTTCATGATAGGAATTCTGTCATACCTCCAATGCGACGAATGCATATTGACCAGGTTTTAGCCTTCTCGAAAAGCTCTGGTGATTCTCAGGGCGACCTTGACCTCAGTGTTGACCATCCTAATTCTGACCGTGATAGAGCGGTTAGGAGAGGAGAGAGAGAACAGCGTTGGCAAAGGGATAAGGACAAGGATGGTAGGGACATTAGAGATGAGAGAGAACAACAATGGGAACAGGATGATAAAGGTTACAAACATGATGGTACATATTTTCCCATGAGAGGATATTCCTTTTTGAAAGTCGTTGCAGATATGGAAGGTGAAAAAACTGCCTTCTATGAAAAGGTGATGGACAAGTTACAAAACGAAGGTGATTGCCATAAATTTTCGAGGTGTCTAGTTATCTATTTCAAGAATATAATTACAAGACCAGAACTACTATCTCTGGAAATTATTGTGAGTGATTTACTTGGAAGACATCCAGACCTCATGGATGAGTTTGATGAATTTCTAGCGTATTGTGAAAAGAATGGTAACACTTTGGAAACTCAGTTTTACTTGTTCTTGTGGAACGAAGAGTATCTATCAAGATTGGTCAAGGTAGATACTGGAGAAAGAAATAGAGATAGAGACGATGAAAATAGTAAAGAGATTGGCAATAACAAGTTGACTTTGTTCTCTACCAAGGACAAGTATCTCTTCAAGCCTATCAGTGAACTTGATCTCTCAAACTGTGAGAGCTGTACCCCTAGTTACCGTCTGCTACCAAATAATTATCCAATACCTTATGCCAGCCAGAGAACAGAGCTTGGTGATCGAGTATTAAATGATCATTGGGTTTCTGTGACTTCTGGCAGTGAGGATTACTCTTTTAAACACATGCGTAAAAACCAATATGAAGAAAGCTTGTTTCGTTGTGAAGATGACAGGTTTGAACTGGATATGTTGCTAGAATCTGTCAATGCAACCACAAAGTGTGTTGAAGAATTATTAGAAAAGATGAACAACAACATAATTAAATCAAATGGTCCATTTCGAATAGAGGATCACTTAACAGCTTTGAACCTTAGGTGCATTGAACGCTTATATGGTGACCATGGACTTGATGTGATAGACGTGCTAAGGAAGAGTGGACCTCTTGCTTTGCCAGTCATATTGATTCGCTTGAAACAAAAGCAAGAAGAGTGGGCACGGTGCCACTATGATTTTAATAAAGTTTGGGCTGATATTTATGCTAAGAATTATCATAAATCTCTTGATCATCGCAGTTTCTATTTCAAGCAACAGGATTCTAAAAGCTTGAGCACAAAAGCCTTATTGGCTGAAATCAAAGAAATTAATGAGAAGAAATGCAAAGAAGATAGCGTGCTGCTTGCTATTGCTGCTGGAAATAGGCGACCTATAATTCCAAATTTGGAATTTGAGTATTTTGATGCGGAGATTCATGATGATCTATATCATCTCATCAAATATTCCTGTCAAGAACTTTTTACGGCTGATCTATCTGATAAAATTATGAAGATTTGGACAATGTTCTTGGAACCCATGCTTGGTGTTCCTTCCCGACCTCAGAGTACTGAGTTAGCTGGAGATGCCATCTTGCCAAGTAATCTTGGCCACAAAGGTGGTGCTGACATTGCTGTTGAGAGTGATGGAAGCCCTGGTGATGGTGTTACTGGATCCAAGAGGCTGAATTCTTTGAAAAAGGGGGTTAAAAGTATTGCATGTGAACAATCCAGTTGTGGCAGGACTAGATCTGAAAATTTTGATAGTGGGGTAAATGAAAATTTTGATAGTGCAGTGGAGCGAAGGAATGGACAAACTAACATTGAAAACATATCAGGTTCGACCACTGTTGTTTCTAGAGAAGGCGATGGCACTGTTGATATTGAACGGAAGTTGCCTATACCAGAGGGGATCGATTCTGTACGACTGGTAATGGGCTCAACTGCTGTCAACACAGAAGGAATAGAAATTCGGACAGATAATGAAGGGGTTACCAAAAATGTCAATATAGAAAGAGAGGAAGGTGAATTATCTCCGATTGGTGATTTTGATGATAATTTTGTGAATTACGGAGCAGCTGGTGTAGAATTTTTCAATAAGTCCAAGGATTCTTCAGTAGGCAGGCAAAATTTAATCGCACATGTGGAGGAAAAACGATGTCAAAGGGAAGTAAGAGGAGAGAATGGTATAACTGCTGATTATGACGGTGAGGAAAGTGCTCACAGGTCATTGCAAGACAGTGAAAATGCTTTTGAAATTGGTGATGTTTCTGGAAGTGAATCTGGTAATGGTGAGCGCGAAGATCACGAGGTAGAACGAGATCATGACGAGCGTGGTGATAAGGCTGAGAGTGAAGGTGAGGTTGAGGTGATAGATGATACCCAAGATGTTGAAGGAGATGAAACATCTATACCATCTGCCGAAAATTTTTTGCAATCTTCAAAGCCTCTTGTTAAACATGTTCTTCCTGCATTGCACAACAAAGAGAAGAATTCACGGGTTTTTTATGGAAATGACTCGATGTATGTGCTTCTGAGGCTTCACCAAACATTGTATGAGAGAATACAATCAGCAAAGATTAATTCCCTATCTACTGAGAGGAAGTGGCGGGTGTCAAACGATAAAATTCCAGCTAATCTCTATACCAGGTTCATGAATGCACTTTACAGTTTACTTGGTGGCTCTTTTGATAATACCAAATTTGAGGACGATTGTCGAGCTCTTATTGGAACCCAGTCATACATTTTATTTACATTGGACAAGTTGTTGTATAAATTTGTTAAACATCTTCAAGTGATTGCCACTGATGAGATGGATAACAAGCTTCTCCAACTATATGAATATGAAAAATCAAGAAAGGCTGCAAGATTTGCGGATGCTGTTTATTATGAAAATGCCCGTGTTCTTCTTCACGACGATAATATATATCGCATAGAATGTTCGTCCAATCCAACACAGGTGTCCATTCAGCTCATGGATTACGGTCAGGATAAACCTGAAATGTCTGCTATTTCCATGGACCCTAATTTTTCAATCTATCTTTACAATGAATTCCTGTCAACACCTACCGAGGAGGATCCGGAGATTTTCTTAAAGAGGTCAGAACAATTGTTGCATAGCATATCTATTACACTAGCTTTTGTTTTAAACCACTGTTTTCTTTATTGTTTTGGCAGAAATAAACGGAAAAATGTGTTTGACGATGAAAGCTTTGCTGCAAATGAGGTTGAAATTGTTAATGGTCTTGAGTGTAAGATAGCTTGCAATTCATCAAAGGTGGTCTCCTACGTATTAGATACGGAAGACGTTTTGTATCGAAGGAGGAGAAAACATTGTGCAAGTAGTAGAAAGAGCTCATGCGACCAGGAAGGGTCTTTAAATAGAAATTTGAATAGAGCACAGCGTTTTCATAGAATACTTGCCAGCTCATAG 3993 39.02 SSGQPQMMGGGNTHKLTTNDALTYLQAVKEIFQDNKEKYDDFLDVMKDFKAQRIDTAGVIVRVKELFKGHPDLIFGFNTFLPKGYEITLPLNDDKRTQKKPVAFEEAINFVNKIKTRFKGDDHVYKSFLDILNMYRKESKLICEVYREVSLLLNGHADLLAEFSNFLPDSSGKSSTQCAPSSRNSNLHDRNSVIPPMRRMHIDQVLAFSKSSGDSQGDLDLSVDHPNSDRDRAVRRGEREQRWQRDKDKDGRDIRDEREQQWEQDDKGYKHDGTYFPMRGYSFLKVVADMEGEKTAFYEKVMDKLQNEGDCHKFSRCLVIYFKNIITRPELLSLEIIVSDLLGRHPDLMDEFDEFLAYCEKNGNTLETQFYLFLWNEEYLSRLVKVDTGERNRDRDDENSKEIGNNKLTLFSTKDKYLFKPISELDLSNCESCTPSYRLLPNNYPIPYASQRTELGDRVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKCVEELLEKMNNNIIKSNGPFRIEDHLTALNLRCIERLYGDHGLDVIDVLRKSGPLALPVILIRLKQKQEEWARCHYDFNKVWADIYAKNYHKSLDHRSFYFKQQDSKSLSTKALLAEIKEINEKKCKEDSVLLAIAAGNRRPIIPNLEFEYFDAEIHDDLYHLIKYSCQELFTADLSDKIMKIWTMFLEPMLGVPSRPQSTELAGDAILPSNLGHKGGADIAVESDGSPGDGVTGSKRLNSLKKGVKSIACEQSSCGRTRSENFDSGVNENFDSAVERRNGQTNIENISGSTTVVSREGDGTVDIERKLPIPEGIDSVRLVMGSTAVNTEGIEIRTDNEGVTKNVNIEREEGELSPIGDFDDNFVNYGAAGVEFFNKSKDSSVGRQNLIAHVEEKRCQREVRGENGITADYDGEESAHRSLQDSENAFEIGDVSGSESGNGEREDHEVERDHDERGDKAESEGEVEVIDDTQDVEGDETSIPSAENFLQSSKPLVKHVLPALHNKEKNSRVFYGNDSMYVLLRLHQTLYERIQSAKINSLSTERKWRVSNDKIPANLYTRFMNALYSLLGGSFDNTKFEDDCRALIGTQSYILFTLDKLLYKFVKHLQVIATDEMDNKLLQLYEYEKSRKAARFADAVYYENARVLLHDDNIYRIECSSNPTQVSIQLMDYGQDKPEMSAISMDPNFSIYLYNEFLSTPTEEDPEIFLKRSEQLLHSISITLAFVLNHCFLYCFGRNKRKNVFDDESFAANEVEIVNGLECKIACNSSKVVSYVLDTEDVLYRRRRKHCASSRKSSCDQEGSLNRNLNRAQRFHRILASS 1330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12990587 12999246 + Bda007757.3 Bda11g01246 16354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01246 1330 MobiDBLite consensus disorder prediction 171 191 - -
Bda11g01246 1330 SUPERFAMILY PAH2 domain 98 169 IPR036600 GO:0006355
Bda11g01246 1330 ProSiteProfiles PAH domain profile. 100 170 IPR003822 GO:0006355
Bda11g01246 1330 MobiDBLite consensus disorder prediction 171 194 - -
Bda11g01246 1330 Pfam Sin3 family co-repressor 432 522 IPR013194 -
Bda11g01246 1330 Pfam Paired amphipathic helix repeat 123 167 IPR003822 GO:0006355
Bda11g01246 1330 Pfam Paired amphipathic helix repeat 313 356 IPR003822 GO:0006355
Bda11g01246 1330 Pfam Paired amphipathic helix repeat 37 81 IPR003822 GO:0006355
Bda11g01246 1330 SUPERFAMILY PAH2 domain 294 360 IPR036600 GO:0006355
Bda11g01246 1330 MobiDBLite consensus disorder prediction 223 269 - -
Bda11g01246 1330 MobiDBLite consensus disorder prediction 911 932 - -
Bda11g01246 1330 MobiDBLite consensus disorder prediction 911 989 - -
Bda11g01246 1330 MobiDBLite consensus disorder prediction 948 972 - -
Bda11g01246 1330 Pfam C-terminal domain of Sin3a protein 1022 1291 IPR031693 -
Bda11g01246 1330 Gene3D Paired amphipathic helix 289 361 IPR036600 GO:0006355
Bda11g01246 1330 PANTHER SIN3B-RELATED 7 1308 IPR039774 GO:0003714
Bda11g01246 1330 Coils Coil 502 522 - -
Bda11g01246 1330 PANTHER PAIRED AMPHIPATHIC HELIX SIN3-LIKE PROTEIN-RELATED 7 1308 - -
Bda11g01246 1330 Gene3D Paired amphipathic helix 98 171 IPR036600 GO:0006355
Bda11g01246 1330 ProSiteProfiles PAH domain profile. 14 84 IPR003822 GO:0006355
Bda11g01246 1330 SMART hdac_interact2seq4b 429 529 IPR013194 -
Bda11g01246 1330 Gene3D Paired amphipathic helix 20 82 IPR036600 GO:0006355
Bda11g01246 1330 MobiDBLite consensus disorder prediction 210 269 - -
Bda11g01246 1330 SUPERFAMILY PAH2 domain 12 83 IPR036600 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01246 K11644 SIN3A; paired amphipathic helix protein Sin3a - mnt:21394293 1536.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01576 Bda11g01246 CCT
Bda07g01576 Bda11g01246 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01576 Bda-Chr7:29203387 Bda11g01246 Bda-Chr11:12990587 0 dispersed
Bda01g02241 Bda-Chr1:58229442 Bda11g01246 Bda-Chr11:12990587 2.44E-27 wgd
Bda10g01002 Bda-Chr10:44210161 Bda11g01246 Bda-Chr11:12990587 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021234 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16681 PF16879 Sin3a_C 2.40E-51 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01246 Bda_Chr11 FPKM 13.222222 12.933242 16.01915 9.726756 10.199371 8.011663 13.65778 3.980792 2.892906