Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01247 ATGACCACGGAAATCTTGCGTAACATGTTGTATCAGAGTGTAGGGATGTTGTCTTCTGGGAGTGGATTATTCCATGTTGATGCGATTGTTTTAGATGAAGTTCATTATCTTAGTGATATTTCACGGGGTACGGTGTGGGAAGAGATAGTTATTTATTGTCCCAAAGAAGTTCAACTTATATGTCTTTCAGCAACAGTTGCTAATCCAGATGAACTAGCTGGTTGGATAGGACAGATTCATGGCAAGACTGAGTTGGTTACTACGTCAAAGCGTCCAGTTCCACTATCATGGCATTTCTCCACAAGGAATTCTCTGTTACCTCTTCTTGATGAGAAAGGAACACAAATGAATAGGAAGCTGTCACTCAACTATCTTCAACTCCATGCTTCAGGAGTTAAGTCCTACAAAGAAGATGGCTATAAAAGAAGGAATTCAAGAAAACGTGGAAGTCAGATGAGCTACGATGATATTAGTAGCATAACTGGACAACAGTCTCTTTCCAAACAAGACATAAACTCCATTCGTCGATCACAAATTCCTCTGGTCACAGATACACTATGGCAACTTAAGGGTGGGGATATGCTTCCAGCAATTTGGTTCATATTTAGCAGGAAAGGTTGTGATGCAGCAGCTCAATATCTGGAAGGTAGTAAACTCTTAGATGAATGTGAGACAAGTGAGGTTGAATTGGCCTTGAAGAAATTTCGCATGCAGTATCCTGATGCTGTCAGGGAGACAGCTATCAAAGGTCTTCTTCAAGGGGTTGCTGCACATCATGCTGGCTGTTTACCACTATGGAAGTCATTTATAGAAGAACTCTTTCAACGAGGACTTGTTAAGGTTGTCTTTGCGACTGAAACACTAGCTGCAGGAATTAACATGCCTGCTAGGACGGCAGTTATTTCATCCATAAGCAAAAGAAGTAATACAGGTCGCATCCAATTGAGTTCAAACGAACTACTTCAAATGGCAGGGCGTGCCGGACGTAGAGGTATTGATGGAAGAGGTCACGTGGTGCTTGTTCAAACTCCTTCTGAAGGGGCCGAAGAAAGCTGCAAACTTTTATTTGCTGGTATGGAACCTCTTGTTTCACAGTTTACTGCATCCTACGGAATGGTGCTGAATCTTCTTTCAGGAGCAAAAGTTACGCGCAGATCAAATGACGCAAATGATAAGAAAGCCTTCCTTGCTGGACGAACTTTAGATGAAGCTAGGAAGTTGGTGGAGAAAAGTTTTGGAAATTATGTTGGGAGCAACGTTATGCTTGCTGCAAAAGAAGAACTAACTAAAATAAAGAAAGAGATTGAGATATTAACCTCAGAAATAACAGATGAAGCCATAGATAGAAAGAGCAGGAAGCTTATGTCAGTTGAATCATACAAGGAGATTGCAGAATTACAAGATGAATTAAGGTCACAGAAACAACTGAGGACAGAATTGCGAAGAAAGATGGAAACACACAGAATCTCAGCTCTGAGATCTCTACTGATGGAGTGCCAAAATGGACAACTACCCTATATTTGCTTGCAATACAAAGATTCTGAAGGGGTTGAACACTCAGTTCCTTCTTTGTTCCTGGGAAATGTGGGCTCATCAGAACTTAGAAATATAGTTGCTACAAATGCATCGTCGCCAGTAAATATGATCGAAGAAGAGCATATTGACGAAGATCATGCAATAGACGAGAATGTAGGCGTCAAGCCATCATATTATGTGGCTTTAGGTTCAGATAATGCTTGGTACCTATTCACTGAGAATTGGATTAGAGCTGTTTACAAAACCGGCTTTCAAAATGTCCCTTTAGCAAAAGGGGATGCAATGCCTCGGGAAATTATGAGGAGGCTCCTTGATAACGAGGAGAAAAAGTGGGAAAATCTTGCCGAGTCCGTACAGGGTAGTTTATGGTGCATGGAAGGATCTCTAGAGACATGGTCATGGAGTTTAAACGTACCAGTTTTGAATAGTCTTTCGGAAAATGATGAATTATTACAAGAATCTCCAGCATATCTCGAAGCATTAAACTGTTACAAGGAACAAAGAACTAAAGTTGCTCGTTTGAAGAAAAGAATAGCTCGGACAGAAGGCTTTAAAGAATATAAGAAGGTTGTTGACATGACGAAGATGATCGAGGATAAGATACGACAACTGAAGGCTAGGTCGAGCCGGCTGAGTAACCGAATAGAGCAAATTGAACCATCTGGCTGGAAGGAGTTTTTGCATATTAGTAATGTGATACATGAAATGCGGGCACTTGACATTAATACTCATGTGATATATCCTCTTGGAGAAACAGCAGCAGCCATTCGAGGAGAAAATGAACTCTGGCTGGCAATGGTTCTAAGAAGTAAACTTCTGTTAGATCTAAAACCTGCACAACTAGCTGGTTTTGTTGCAAGTTTAGTTTCTGAAGGGATCAAACTACGCCCCTGGAAAAACAATAATTACATATTTGAACCTTCAATTGCGGTGATCAAGGTCATAAACATCTTGGAAAATCAAAGAAGTAGTCTCATGCGTATTCAAGAGAAGCATGGAGTTAACATAACAATTTGCTTGGATTGTCAATTCTCAGGTATGGTTGAGGCCTGGGCTTCTGGGTTAACTTGGAGGGAAATGATGATGGATTGCGCAATGGACGAGGGGGACCTAGCCCGTCTTTTGCGCAGGACGATAGATCTGCTCGCCCAGATTCCGAAATTGCCAGATATTGACCCGTTACTTCAAAGCAATGCATCTACTGCTTCAAATGTCATGGACCGGCCTCCAATAAGCGAACTTGCTGGATGA 2787 41.37 MTTEILRNMLYQSVGMLSSGSGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTTSKRPVPLSWHFSTRNSLLPLLDEKGTQMNRKLSLNYLQLHASGVKSYKEDGYKRRNSRKRGSQMSYDDISSITGQQSLSKQDINSIRRSQIPLVTDTLWQLKGGDMLPAIWFIFSRKGCDAAAQYLEGSKLLDECETSEVELALKKFRMQYPDAVRETAIKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSISKRSNTGRIQLSSNELLQMAGRAGRRGIDGRGHVVLVQTPSEGAEESCKLLFAGMEPLVSQFTASYGMVLNLLSGAKVTRRSNDANDKKAFLAGRTLDEARKLVEKSFGNYVGSNVMLAAKEELTKIKKEIEILTSEITDEAIDRKSRKLMSVESYKEIAELQDELRSQKQLRTELRRKMETHRISALRSLLMECQNGQLPYICLQYKDSEGVEHSVPSLFLGNVGSSELRNIVATNASSPVNMIEEEHIDEDHAIDENVGVKPSYYVALGSDNAWYLFTENWIRAVYKTGFQNVPLAKGDAMPREIMRRLLDNEEKKWENLAESVQGSLWCMEGSLETWSWSLNVPVLNSLSENDELLQESPAYLEALNCYKEQRTKVARLKKRIARTEGFKEYKKVVDMTKMIEDKIRQLKARSSRLSNRIEQIEPSGWKEFLHISNVIHEMRALDINTHVIYPLGETAAAIRGENELWLAMVLRSKLLLDLKPAQLAGFVASLVSEGIKLRPWKNNNYIFEPSIAVIKVINILENQRSSLMRIQEKHGVNITICLDCQFSGMVEAWASGLTWREMMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPLLQSNASTASNVMDRPPISELAG 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13000852 13005148 - Bda007758.3 Bda11g01247 16355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01247 928 Coils Coil 463 483 - -
Bda11g01247 928 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 1 924 - -
Bda11g01247 928 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 181 377 IPR001650 -
Bda11g01247 928 SMART DSHCT_2 753 927 IPR012961 -
Bda11g01247 928 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 84 IPR014001 -
Bda11g01247 928 Gene3D - 92 362 IPR027417 -
Bda11g01247 928 Coils Coil 421 441 - -
Bda11g01247 928 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 1 924 - -
Bda11g01247 928 Gene3D - 1 91 IPR027417 -
Bda11g01247 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 78 IPR027417 -
Bda11g01247 928 SMART helicmild6 245 331 IPR001650 -
Bda11g01247 928 CDD SF2_C_Ski2 186 343 - -
Bda11g01247 928 Gene3D - 702 920 - -
Bda11g01247 928 Pfam DSHCT (NUC185) domain 757 923 IPR012961 -
Bda11g01247 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 346 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01247 K26077 ISE2, EMB25; ATP-dependent RNA helicase ISE2 [EC:3.6.4.13] - qsu:112008576 1416.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01543 Bda11g01247 CCT
Bda07g01543 Bda11g01247 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00120 Bda-Chr11:1627347 Bda11g01247 Bda-Chr11:13000852 7.26E-51 dispersed
Bda11g01247 Bda-Chr11:13000852 Bda11g01720 Bda-Chr11:51631306 1.69E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012724 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01247 Bda_Chr11 FPKM 29.401516 32.869225 16.419125 17.248457 31.832499 27.460993 31.344687 8.042232 7.595402