Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01252 ATGCTCATCCCTACCTCCATTCTCAGCCTCGATAGGTCAGCTGCTACAGTGTCGCATTGTTTCTTTCCTAGAAATTATGGCGTCATTAGTTCGCTTCTCGGTGTTTGTCAGAGAAGTGCGTCCGTACATTCGGTCGGATTCTGTGCGTCAAATTTGCGGGGAAGGATTGGACTCAGAAAACGAGGGAAAGGTCGCAGTGGCGTGATGGAAATGAATGATTCTGATGATGATTATGGCGAGGACGAGGATGATGTCTTTGATGGTTTTAGTGATGATGATGGCGAAGGCGAAGAGGATATGCCTTTACCGCTTCAGAAGATGAAGAAGTGGATGGAGAATAAGCCTCGCGGCTTTGGGGAAGGGAAAGTGTATGATACTTCTCTTGAAGACGATTTGCTCAAGGAAATTGAGCAGAGTAAGGAGGCACTAGCTTCAAATCTCAGCAAGCTTAAGAACGCTTCCAAATCTCCAACTAATAAACAATCTTCAGAAAAGAAAGCTCTTGGGGTTGTTAAGAATGGAGCTCGAGTTCGTGTGATTAACCTTCCCAAGAAAAAGAACATTCACAGAGATTTGAAGTTAGCTTTTGATGGGGTTCCTGGAATCATTAATATCATTCCAGCAGTTGAAGGAAATAAAAAGACCAGAGACCCTGTCTGCAAGGGCTTTGCTTTTGTTGATTTCAAATCTCATGGGGATGCAACAAGGTTTCTGCAAACATTTTCTAATCGTAGTCTAACATTTGGGAAGATTGAGAAGCAAATTAAATGTGAGATGATGAATTCAGGCTCTACTGATTCTGATCAAGAACAATCAGCAGATCAAACCAATAACATCTCTCAAATACCTAATGCCATCGTGGAAGTAGACCAAATAATTGATTCTGATGTAGATGATGATGATTCTTCTCTAGAGCATTGGGAGGAGAACTCCTTTGACGATCTTGATGATGATGATGATGATAGCGACGAAGAAGAAGAAGAAGAACAAGAACAAGAGAATATCATTATGGCTGAATTCAAAGAGATCAGAGAGAGTGTCAAGTCGAAGAATGAACAAAGCTCAAATGTTAGTGAAGGTGATAATACTGGATCAAGGATGGAGAGAGTGACTAAACCCTTATCTCCTAAAGAGCTGGAGAGAGCTCAAGCGCTAGAGAGAATTAGGGCATTAGAAAAGAGGCTACTAGATAGAGGAAAGCGAGAAAAAATATTCAGAGAAACACTACCAGAAAGAGAAAGTAAGAAGAAAGTGAAACCCCCCAAGAAAAAGCTAGTTGTGAAAGGAAATGGAGATAAAACTCCGAAGTTGGACATTACCGGATCTGCAAAAAGGTTGAAGGTGAAGGAGAAGGCTGTGCTAACTGATGTTATCTCTAGATATGGAGACAAAGCTGCTAAAAAAAAAGGGTAA 1413 41.19 MLIPTSILSLDRSAATVSHCFFPRNYGVISSLLGVCQRSASVHSVGFCASNLRGRIGLRKRGKGRSGVMEMNDSDDDYGEDEDDVFDGFSDDDGEGEEDMPLPLQKMKKWMENKPRGFGEGKVYDTSLEDDLLKEIEQSKEALASNLSKLKNASKSPTNKQSSEKKALGVVKNGARVRVINLPKKKNIHRDLKLAFDGVPGIINIIPAVEGNKKTRDPVCKGFAFVDFKSHGDATRFLQTFSNRSLTFGKIEKQIKCEMMNSGSTDSDQEQSADQTNNISQIPNAIVEVDQIIDSDVDDDDSSLEHWEENSFDDLDDDDDDSDEEEEEEQEQENIIMAEFKEIRESVKSKNEQSSNVSEGDNTGSRMERVTKPLSPKELERAQALERIRALEKRLLDRGKREKIFRETLPERESKKKVKPPKKKLVVKGNGDKTPKLDITGSAKRLKVKEKAVLTDVISRYGDKAAKKKG 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13116211 13118811 - Bda007767.1 Bda11g01252 16360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01252 470 MobiDBLite consensus disorder prediction 147 167 - -
Bda11g01252 470 SUPERFAMILY RNA-binding domain, RBD 153 264 IPR035979 GO:0003676
Bda11g01252 470 MobiDBLite consensus disorder prediction 350 364 - -
Bda11g01252 470 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 56 467 - -
Bda11g01252 470 MobiDBLite consensus disorder prediction 297 377 - -
Bda11g01252 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 262 IPR000504 GO:0003723
Bda11g01252 470 MobiDBLite consensus disorder prediction 147 166 - -
Bda11g01252 470 Gene3D - 122 259 IPR012677 -
Bda11g01252 470 MobiDBLite consensus disorder prediction 73 98 - -
Bda11g01252 470 MobiDBLite consensus disorder prediction 63 100 - -
Bda11g01252 470 CDD RRM_SF 177 246 - -
Bda11g01252 470 MobiDBLite consensus disorder prediction 407 438 - -
Bda11g01252 470 MobiDBLite consensus disorder prediction 297 333 - -
Bda11g01252 470 MobiDBLite consensus disorder prediction 334 349 - -
Bda11g01252 470 Coils Coil 133 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01252 - - - zju:107419902 293.893
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g778 . . . Bda11g01252 Bpe13g01448 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01252 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008214 1 1 0 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 1 1 1 1 1 0 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01252 Bda_Chr11 FPKM 17.202566 18.072269 18.427301 19.255028 13.919409 15.799204 14.834358 14.944574 14.846104