Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01256 ATGTTATTATGCACCCGAATCAAAGGCGCTCTTTCTCTGCATTTTCTCCGTCACTCAGCCTCAGCCTCCGCCTTCATTTCTACTCTGCCGCCGTCTAGACCATCTCTCCGCTATTTCTGCTCTTCTTTGTCGCCCTCAGAGGTTACCATGGTGGCGGAGCATTTAAAGGATGAGGACTACCTCAAAATTATAATTCCCAAGCGCATCCAGCTATTTGAGTCCATCAAAGCTCAGCAGCTAGCTCATCGTCAATCTCTTCCGTCGGATCCCATCAAGATTACCTTGCCGGACGGAACAGTGAAGGAAGGTAAAAAGTGGCAAACATCTCCCTTTGACGTTGCTAAGGAACTTTCAAAAAGTTTGGCCACAAACGCTTTGATTTCTCAAGTGGACGGAGTTTTATGGGACATGAGTAGACCGCTTGAGAGTGACTGTGAGATTAAGATTTTCACTTTTAGTAGCGATGAAGGGCGTGATACGTTTTGGCATTCTAGTGCTCATATACTCGGACAGTCACTAGAGATGGAATACGGTTGCAAGCTTTGCATTGGACCTTGCACCACTCGAGGAGAGGGCTTCTATTATGATGCATTTTATGGTGATTTAGGCTTGAACGAAGACCATTTCAAAAAAATTGAAGCGGGGGCACTAAAGGCTGTTGCGGAGAAACAGCCATTCGAGCGTATTGAAGTGTCAAGGCAACAGGCACTTGAGATGTTTTCTGACAATACTTTTAAGGTTGAAATTATCAAAGATTTGCCTGAAGACAAGACTATTACAGTATATAGATGTGGCCCTTTAGTTGATTTATGTCGCGGCCCCCACATTCCAAATACATCCTTTGTGAAGGCGATTGCATGTCTGAAGGCTTCATCAGCATATTGGAGAGGAAACAAAGATCGTGAAAGCTTACAAAGGGTTTATGGTATCTCTTATCCCGATCAAAAAAGTTTGAAGGAATATATAAATTTGCTGGAAGAAGCCAAGAAGTATGACCATCGTTTGTTGGGTACAAAACAAGATCTTTTCTTTTGCCATCCGCTTAGTCCAGGAAGTTGGTTCTTCCTTCCTCATGGGGCTCGAATCTACAACAAACTAATGGAGTTTATACGGACACAATATAGGGAGAGAGGTTATGAAGAGGTTTTATCACCAAATATGTACAATATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAGGAGAATATGTTTGTGTTTGAGATTGAAAAGCAAGAATTTGGATTGAAACCAATGAATTGTCCTGGGCACTGTTTGATGTTCCAACACAGAGTTCGCTCATATAGGGAACTTCCTCTTCGATTGGCTGATTTTGGAGTTTTGCACCGTAACGAGGCCAGTGGTGCTCTGACTGGCCTAACTCGTGTGAGGAGGTTTCAACAGGATGATGCTCACATCTTCTGCTCTAAGTCTCAGATAAAAGATGAAGTGAGGGGCGTCTTAGAATTCATCAAATATATCTACAACATTTTTGGGTTCACCTTTGATCTGAAGCTGTCAACGAGGCCTGAAAAATACCTTGGAGACATAGCTACATGGGAGGAAGCTGAAGCAGCTCTTACAGAAGCATTAAATGAATTTGGTAAACCCTGGCAGCTAAATGAAGGTGATGGTGCATTTTATGGGCCAAAGATAGACATTAGTGTTTCTGACGCATTGAAGAGGAAATTTCAATGTGCGACGCTACAGTTGGACTTCCAACTTCCCAAGCGTTTTGAATTATATTACTCTACAGAGGATGAAGCCAAGAGAGAGATGCCTGTGATGATACATAGAGCCATTTTGGGGTCTGTTGAGCGAATGTTTGCTATTTTGTTGGAGCATTACAAGGGGAAATGGCCTTTTTGGCTTAGTCCACGTCAAGCCATTGTTTGCCCCGTGTCGGAGAAATCCCAATCTTATGCACTTACGGTGCGTGATCAAATTCATCATGCTGGTTATTACGTCGATGCCGATATAACTGATCGGAAGATCCAAAAAAAGGTACGAGAAGCCCAGTTGGCGCAGTACAACTTTATCTTGGTTGTTGGTGAGGAGGAGGCCAACACTGGACAGGTGAGTGTTCGAGTCAGAGATAAAGCCGATCACAGAGTGATGAGCATCGAGGACTTGCTCAAACACTTCGAAGAAGAGAATGCAGCTTTTCATTAG 2178 43.3 MLLCTRIKGALSLHFLRHSASASAFISTLPPSRPSLRYFCSSLSPSEVTMVAEHLKDEDYLKIIIPKRIQLFESIKAQQLAHRQSLPSDPIKITLPDGTVKEGKKWQTSPFDVAKELSKSLATNALISQVDGVLWDMSRPLESDCEIKIFTFSSDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNEDHFKKIEAGALKAVAEKQPFERIEVSRQQALEMFSDNTFKVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGNKDRESLQRVYGISYPDQKSLKEYINLLEEAKKYDHRLLGTKQDLFFCHPLSPGSWFFLPHGARIYNKLMEFIRTQYRERGYEEVLSPNMYNMQLWETSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCSKSQIKDEVRGVLEFIKYIYNIFGFTFDLKLSTRPEKYLGDIATWEEAEAALTEALNEFGKPWQLNEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPKRFELYYSTEDEAKREMPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALTVRDQIHHAGYYVDADITDRKIQKKVREAQLAQYNFILVVGEEEANTGQVSVRVRDKADHRVMSIEDLLKHFEEENAAFH 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13180439 13186030 - Bda007771.1 Bda11g01256 16364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01256 725 Gene3D Bira Bifunctional Protein; Domain 2 314 621 IPR045864 -
Bda11g01256 725 CDD TGS_ThrRS 91 156 - -
Bda11g01256 725 Pfam TGS domain 91 151 IPR004095 -
Bda11g01256 725 SUPERFAMILY Class II aaRS and biotin synthetases 332 615 IPR045864 -
Bda11g01256 725 Coils Coil 700 720 - -
Bda11g01256 725 Hamap Threonine--tRNA ligase [thrS]. 156 723 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda11g01256 725 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 409 618 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda11g01256 725 Gene3D - 89 150 IPR012675 -
Bda11g01256 725 SUPERFAMILY Class II aaRS ABD-related 616 720 - -
Bda11g01256 725 SUPERFAMILY ThrRS/AlaRS common domain 153 330 IPR018163 GO:0000166
Bda11g01256 725 Gene3D - 622 725 IPR036621 -
Bda11g01256 725 ProSiteProfiles TGS domain profile. 89 151 IPR004095 -
Bda11g01256 725 Gene3D - 154 312 - -
Bda11g01256 725 SUPERFAMILY TGS-like 91 152 IPR012676 -
Bda11g01256 725 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 320 623 IPR006195 -
Bda11g01256 725 CDD ThrRS_core 332 628 IPR033728 -
Bda11g01256 725 CDD ThrRS_anticodon 628 718 - -
Bda11g01256 725 PANTHER THREONINE-TRNA LIGASE 53 724 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda11g01256 725 SMART tRNA_SAD_4 259 308 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bda11g01256 725 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 259 308 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bda11g01256 725 PRINTS Threonyl-tRNA synthetase signature 552 580 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda11g01256 725 PRINTS Threonyl-tRNA synthetase signature 596 609 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda11g01256 725 PRINTS Threonyl-tRNA synthetase signature 418 446 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda11g01256 725 PRINTS Threonyl-tRNA synthetase signature 451 474 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda11g01256 725 PRINTS Threonyl-tRNA synthetase signature 623 635 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda11g01256 725 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 53 724 - -
Bda11g01256 725 Pfam Anticodon binding domain 630 719 IPR004154 -
Bda11g01256 725 TIGRFAM thrS: threonine--tRNA ligase 162 719 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01256 K01868 TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3] - csv:101212232 1259.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02229 Bda11g01256 CCT
Bda01g02229 Bda11g01256 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01256 Bda-Chr11:13180439 Bda15g00982 Bda-Chr15:18231833 2.16E-131 dispersed
Bda13g00777 Bda-Chr13:9290743 Bda11g01256 Bda-Chr11:13180439 8.11E-151 transposed
Bda01g02229 Bda-Chr1:58100675 Bda11g01256 Bda-Chr11:13180439 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g751 Blo01g00402 Blo16g01152 Bda01g02229 Bda11g01256 Bpe13g01454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01256 . . Bma01g00058 Bma06g00627 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003702 2 1 2 2 1 1 3 1 1 0 1 1 3 0 1 3 1 1 2 1 1 1 2 2 2 1 1 3 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01256 Bda_Chr11 FPKM 9.121472 10.38018 6.355415 6.168055 22.049154 17.685654 17.853678 2.03303 2.048874