Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01257 GCTGAGTTTCTTCTGGAAGATGGCTACACCGTGACGACAGTGATCGACGGCCATAAAATCGGCGTAAATCCATACGCTGTTCTTCCTCGAGCAGGATCTCCTGATCTTATCGTGCTCGATTCCTCAAATAGTATCTTCTACACCTTATCGCTCCCGTTGTCTACTGAAAACCCGATTAAAAGGTTGTCTGGAAATGGTAGCGGCTATTCGGATGGAAATCTGGATTCCGCCCTCTTTAGAAACCCTCGGAGCTTTGCGATGGACACAAAGGGAAATATTTACGTCGCGGACAAGAAAAACCATGTGATTCGTAAAATCGGCGACAAAGGTTCAATTTGTCCAGGTGTATCCACAATTGCGGGAGGTTATTCGCAGAGCTTGAAGCCAGTTGGGCATGAAGATGGACCGGCTCAAAATGCAACCTTTTCCACTGATTTCAACATCGCCTTTGTTGCAGAGGAGTGTGCTCTACTGGTATCAGATCATGGCAATCAGTTGATCCGACAAATTAATCTCAAACCCGACGATTGCACCACAAAACCACCCCCTGGAGTTGGAGGAGCTTCCATTGTGATTTGGGCAATTGAACTTGGATTTTCTTGCCTGATTGGTATAGTTTTGGGGATAGTGATTCGACCTTATATTTTTCGCAGTGAAGGTTTGAGCGGCAGCCATTGCATGCAGACATGGAAGCTCTCCCGAACCCATCTGGGGAGTCAAGATTGGATTCACTTCTCCGGCATCAGAAGCGCAACTGCTAGCTCCTTAGTACTTGGTTCATTGAAGAGACTCCTCTGGTTGAGCCTCTCTCATCTTTCACTTCTATTTAGGATGGTAAGTGCAGAGCCTCAGGCTGTTCCAAGCAAGTCTGTTTCCTTGCTTGAGGACGATTCATTCATCACTGGGGAGATAATGAAGTCAAAGCCGGATTTTTATGCTGATCAGTTGAAGGATCTGATAGATTTTGGTGGAAATGTGGAGTCATCTTCAAATTCAGGTAATGAAGAAGATGATATTGTTGGAACTACTTCTTGTCTGGAGAGTATGATTGAAGCTAACATCATGAATTTCACCAAGAGGGTCGGAGAGTCGGTTCCATTAGAGACATCTTTGGGTTTGGTTAGGAGGAAATGA 1134 45.33 AEFLLEDGYTVTTVIDGHKIGVNPYAVLPRAGSPDLIVLDSSNSIFYTLSLPLSTENPIKRLSGNGSGYSDGNLDSALFRNPRSFAMDTKGNIYVADKKNHVIRKIGDKGSICPGVSTIAGGYSQSLKPVGHEDGPAQNATFSTDFNIAFVAEECALLVSDHGNQLIRQINLKPDDCTTKPPPGVGGASIVIWAIELGFSCLIGIVLGIVIRPYIFRSEGLSGSHCMQTWKLSRTHLGSQDWIHFSGIRSATASSLVLGSLKRLLWLSLSHLSLLFRMVSAEPQAVPSKSVSLLEDDSFITGEIMKSKPDFYADQLKDLIDFGGNVESSSNSGNEEDDIVGTTSCLESMIEANIMNFTKRVGESVPLETSLGLVRRK 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13193050 13194481 + Bda007772.1 Bda11g01257 16365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01257 377 SUPERFAMILY NHL repeat 7 173 - -
Bda11g01257 377 Gene3D - 8 171 IPR011042 -
Bda11g01257 377 PANTHER - 2 363 - -
Bda11g01257 377 PANTHER NHL DOMAIN-CONTAINING PROTEIN 2 363 - -
Bda11g01257 377 Pfam NHL repeat 79 104 IPR001258 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01257 - - - pvy:116121337 317.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02227 Bda11g01257 CCT
Bda01g02227 Bda11g01257 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00485 Bda-Chr4:53306668 Bda11g01257 Bda-Chr11:13193050 2.57E-85 dispersed
Bda04g00486 Bda-Chr4:53372685 Bda11g01257 Bda-Chr11:13193050 8.76E-29 dispersed
Bda11g01257 Bda-Chr11:13193050 Bda14g01150 Bda-Chr14:10680784 1.21E-36 dispersed
Bda01g02227 Bda-Chr1:58091049 Bda11g01257 Bda-Chr11:13193050 1.72E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g749 Blo01g00400 Blo16g01153 Bda01g02227 Bda11g01257 Bpe13g01455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01257 . . . Bma06g00626 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016197 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01257 Bda_Chr11 FPKM 0.447079 0.433984 1.459591 1.41045 0.0 0.194765 0.201282 0.0 0.0