Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01264 ATGGCAGAATCCAAACCGGGACTAAGGAAACCGGCCTTTACAAAGGTCGACCAACTTCGCCCCGGCACAAGCGGCCACTCTCTTACCGTTAAGGTCGTAAATACTAAGATCGTAACTCAGAAAGGGCGACCTGATGGTTCTCAAGTTCGTCATATGCGAATTGCAGAATGCTTGGTAGGAGATGAGTCGGCTATGATTATTTTCACAGCAAGAAATGATCAAGGAAAATGCCTGCATCCATTTCATTTGTTTTCTTTTTCTTTTGCATTTTCAGTGGACTTGATGAAAGAAGGTGCCACTTTAACTCTGCGAAATGCTAAGATCGACATGTTTAAAGGATCGATGAGACTTGCCGTAGATAAGTGGGGCCGTATCGAAGCTGCCGAACCTGCCAGTTTTACCGTGAAGGAAGACAACAATCTATCACTCATTGAATTTGAGCTTGTTAATGTCGTCCAAGAATGA 465 43.87 MAESKPGLRKPAFTKVDQLRPGTSGHSLTVKVVNTKIVTQKGRPDGSQVRHMRIAECLVGDESAMIIFTARNDQGKCLHPFHLFSFSFAFSVDLMKEGATLTLRNAKIDMFKGSMRLAVDKWGRIEAAEPASFTVKEDNNLSLIEFELVNVVQE 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13275521 13276755 - Bda007781.1 Bda11g01264 16372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01264 154 PANTHER EXPRESSED PROTEIN 3 154 - -
Bda11g01264 154 CDD SoSSB_OBF 27 126 - -
Bda11g01264 154 PANTHER OS05G0244600 PROTEIN 3 154 - -
Bda11g01264 154 SUPERFAMILY Nucleic acid-binding proteins 6 151 IPR012340 -
Bda11g01264 154 Gene3D - 23 143 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01264 - - - csv:101212074 234.958
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01600 Bda11g01264 CCT
Bda07g01600 Bda11g01264 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01264 Bda-Chr11:13275521 Bda15g00968 Bda-Chr15:17868351 7.21E-57 dispersed
Bda10g01023 Bda-Chr10:44359459 Bda11g01264 Bda-Chr11:13275521 2.00E-72 wgd
Bda10g01023 Bda-Chr10:44359459 Bda11g01264 Bda-Chr11:13275521 2.00E-72 wgd
Bda11g01264 Bda-Chr11:13275521 Bda07g01600 Bda-Chr7:29680754 2.93E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g714 . . . Bda11g01264 . Bpe10g00838 Bma14g01791 Bma15g00186 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1037 Cone19ag1028 . Cone12ag0641 . . . . Blo06g00876 Blo11g00914 Bda07g01600 Bda11g01264 . . Bma01g00050 . . . . . Cma05g00010 . Car05g00008 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001754 3 2 1 3 1 1 3 2 1 2 1 2 3 2 2 3 2 7 3 2 2 2 2 2 2 1 2 2 2 4 67