Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01274 ATGCTTTATCCGAACAAACGAAGCAGGGACAGTGAAGATATCTCGAAGCAGAGGCTTCCAATTTCGTCAAATTACAAATTAGGCCATGACGATGCCGATCGTTTAGCAAGTATTAGAAATCAAAATCCGGTGTCAACCGGATTGAGACTATCCTATGACGACGAAGAACACAACTCGTCTGTTACTTCTGCCAGTGGAAGTATGGCTGCTATACCTTCAATTATTTTATCGCTCGGAGATGGTTTTATGGCAGAGCTTGATCGGCAAAAGGAAGAATTCGATAAGTACATGAAAATTCAGGAGGAACACATGGCAAAGAGGGTGAGGGAGATGAAGCAAAGGCATCTAACCTCATTCCTAGCTGCATTGCAGAAAGGGGTAAGCAAGAAACTACAAGAGAAAGACTTGGAGATAGAAAACATAAACAGAAAAAACCAAGCATTGTTCGAGAAAATAAAGCAGGTGGCTTTAGAAGCACACAACTGGCATAGCAAAGCCAAGTACAACGAATCGGTCGTAAACGTCCTCAAGAGCAACCTCCAGCAGGCAATCTCGCATGGAGCCGAGCAGGGGAGAGAAGGGTTTGGAGACAGCGAAGTAGACGACTCGGCCTCACAGATCGACCCAAAAAATCTGGGTTTGAACTACGAGAGCCTGAAGGAGCAGATGATATGCAGAGTTTGCAGGGGGAAGGAGGTTTCAACTATGTTGATTCCTTGTAGACATTTATGTTTGTGTAGTGATTGTGGAGGGTCAGTGGGTGTTTGTCCAGTTTGTCACTCTATCAAAACTTCTGGGATTGAAGTCTATTTGTCCTGA 819 44.32 MLYPNKRSRDSEDISKQRLPISSNYKLGHDDADRLASIRNQNPVSTGLRLSYDDEEHNSSVTSASGSMAAIPSIILSLGDGFMAELDRQKEEFDKYMKIQEEHMAKRVREMKQRHLTSFLAALQKGVSKKLQEKDLEIENINRKNQALFEKIKQVALEAHNWHSKAKYNESVVNVLKSNLQQAISHGAEQGREGFGDSEVDDSASQIDPKNLGLNYESLKEQMICRVCRGKEVSTMLIPCRHLCLCSDCGGSVGVCPVCHSIKTSGIEVYLS 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13349207 13351511 - Bda007792.1 Bda11g01274 16382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01274 272 Coils Coil 131 158 - -
Bda11g01274 272 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 271 IPR017066 -
Bda11g01274 272 MobiDBLite consensus disorder prediction 1 26 - -
Bda11g01274 272 PIRSF SBP1_RNase_bind 5 272 IPR017066 -
Bda11g01274 272 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 1 271 - -
Bda11g01274 272 MobiDBLite consensus disorder prediction 1 16 - -
Bda11g01274 272 Pfam Zinc finger, C3HC4 type (RING finger) 222 261 - -
Bda11g01274 272 ProSiteProfiles Zinc finger RING-type profile. 225 260 IPR001841 -
Bda11g01274 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 272 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01274 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - mnt:21410357 395.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02217 Bda11g01274 CCT
Bda01g02217 Bda11g01274 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00572 Bda-Chr1:32724875 Bda11g01274 Bda-Chr11:13349207 1.84E-46 dispersed
Bda08g01373 Bda-Chr8:54302738 Bda11g01274 Bda-Chr11:13349207 2.92E-31 dispersed
Bda09g00744 Bda-Chr9:13044487 Bda11g01274 Bda-Chr11:13349207 4.17E-29 dispersed
Bda09g00745 Bda-Chr9:13104956 Bda11g01274 Bda-Chr11:13349207 7.44E-29 dispersed
Bda11g01274 Bda-Chr11:13349207 Bda15g00851 Bda-Chr15:13267818 9.50E-26 dispersed
Bda01g02217 Bda-Chr1:58015152 Bda11g01274 Bda-Chr11:13349207 1.08E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g672 . . Bda01g02217 Bda11g01274 Bpe13g00499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01274 . . . Bma06g00614 . . . . Cma05g00020 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007540 2 1 0 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01274 Bda_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0