Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01278 ATGTTGCTCTTCCACTCTGCCATAGGCATAGCTCCAGTTTTGAGCAAATCCAAAAGAATATATAGCCATACGCAACACGAGGGGCTAAGATTATCTCCACCATTACTATTACAACAATTACAGGCGAATCTTTTTTACTTAAAGATTTCAATCATGGACGACTTTTACGGCCTGCAATCAGGCGGGGAGTTCTCAGAGAAGGCGATGATTTCGCCTGAAAACCATATCCTACCTGTAAACTACCAAAACTCGTTTTCATACGGAGCCTTCCGCGATCGTTTTCCGATACTTGGATCCGACGAATTGCTCTCAGCCGCTTCCGTCGTTTTTGAAGCTGAAGCTGCTTCTGTGACGCCAGAAATTCAACGGGAAGAAGACACGGTCAGCATGATAAAGGCCAAAATTGCCTCTCATCCCTGCTATCCTCGTTTGCTCGACACGTATATTGACTGCCAGAAGAAAGACAAATTTATGGTTTTGAGCAGCTGTAATTTTTTTGGGGGGCAGGTAGGGGCGCCGCCGGAGATTGCATCTTTGTTGGAAGAAATCCGACTAGAAAACGACTTTTATAAAAGAGACACAGTTTCAATGGGTTTCGGAGCTGATCCCGAGCTTGACAATTTCATGGTAACGTACTGTGACATCTTGGCCAAATATAAATCAGATCTTGCAAGGCCTTTCGATGAAGCAACAACGTTCTTGAAAAAGATTCAGTCACAGCTTAGTAGCCTCTCCACCGGTGCCTCCGCGAGAAGCCCTTCCGGGGATGTCGCAGAATCTTCAGATGATGATAATGGCGGAAGAGAGCAGGCAGAGGAGCAAGAGGGTTTAAGGAGAGGAGAGGGAAATCATCTGAAAGACGTGCTGTTTCGCAAGTTTGGCAGACAGATCGGAAGCTTAAAAGTGGAATTCTCAGAAGGTGATAAGATAGCACTGGCGGAGGCGACGGGGCTGGACCAGAAGCAAATCAATAACTGGTTCGTTAATCAACGGAAGCGCCACTGGAAGGCTTCTGAGAATATGCAGTTTGCTTTGTTGGATAATATGCCTCCGCCATTCTTTGGAGATTGA 1071 46.03 MLLFHSAIGIAPVLSKSKRIYSHTQHEGLRLSPPLLLQQLQANLFYLKISIMDDFYGLQSGGEFSEKAMISPENHILPVNYQNSFSYGAFRDRFPILGSDELLSAASVVFEAEAASVTPEIQREEDTVSMIKAKIASHPCYPRLLDTYIDCQKKDKFMVLSSCNFFGGQVGAPPEIASLLEEIRLENDFYKRDTVSMGFGADPELDNFMVTYCDILAKYKSDLARPFDEATTFLKKIQSQLSSLSTGASARSPSGDVAESSDDDNGGREQAEEQEGLRRGEGNHLKDVLFRKFGRQIGSLKVEFSEGDKIALAEATGLDQKQINNWFVNQRKRHWKASENMQFALLDNMPPPFFGD 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13413309 13419843 + Bda007796.1 Bda11g01278 16386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01278 356 Pfam KNOX1 domain 131 187 IPR005540 GO:0003677|GO:0005634
Bda11g01278 356 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 52 305 - -
Bda11g01278 356 SMART KNOX1_2 129 189 IPR005540 GO:0003677|GO:0005634
Bda11g01278 356 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 306 347 - -
Bda11g01278 356 CDD homeodomain 296 336 IPR001356 GO:0003677
Bda11g01278 356 ProSitePatterns 'Homeobox' domain signature. 312 335 IPR017970 GO:0000981|GO:0006355
Bda11g01278 356 SMART KNOX2_2 195 246 IPR005541 GO:0003677|GO:0005634
Bda11g01278 356 MobiDBLite consensus disorder prediction 257 280 - -
Bda11g01278 356 SMART ELK_2 284 305 IPR005539 GO:0003677
Bda11g01278 356 MobiDBLite consensus disorder prediction 245 280 - -
Bda11g01278 356 Pfam KNOX2 domain 200 244 IPR005541 GO:0003677|GO:0005634
Bda11g01278 356 SUPERFAMILY Homeodomain-like 305 349 IPR009057 -
Bda11g01278 356 SMART HOX_1 277 341 IPR001356 GO:0003677
Bda11g01278 356 ProSiteProfiles 'Homeobox' domain profile. 305 337 IPR001356 GO:0003677
Bda11g01278 356 Gene3D - 267 344 - -
Bda11g01278 356 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 306 347 - -
Bda11g01278 356 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 305 - -
Bda11g01278 356 Pfam Homeobox KN domain 305 333 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01278 Bda-Chr11:13413309 Bda15g00550 Bda-Chr15:8647777 9.11E-83 dispersed
Bda11g01278 Bda-Chr11:13413309 Bda01g00605 Bda-Chr1:33054749 1.31E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01278 - - vri:117903949 331.257