Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g01278 | ATGTTGCTCTTCCACTCTGCCATAGGCATAGCTCCAGTTTTGAGCAAATCCAAAAGAATATATAGCCATACGCAACACGAGGGGCTAAGATTATCTCCACCATTACTATTACAACAATTACAGGCGAATCTTTTTTACTTAAAGATTTCAATCATGGACGACTTTTACGGCCTGCAATCAGGCGGGGAGTTCTCAGAGAAGGCGATGATTTCGCCTGAAAACCATATCCTACCTGTAAACTACCAAAACTCGTTTTCATACGGAGCCTTCCGCGATCGTTTTCCGATACTTGGATCCGACGAATTGCTCTCAGCCGCTTCCGTCGTTTTTGAAGCTGAAGCTGCTTCTGTGACGCCAGAAATTCAACGGGAAGAAGACACGGTCAGCATGATAAAGGCCAAAATTGCCTCTCATCCCTGCTATCCTCGTTTGCTCGACACGTATATTGACTGCCAGAAGAAAGACAAATTTATGGTTTTGAGCAGCTGTAATTTTTTTGGGGGGCAGGTAGGGGCGCCGCCGGAGATTGCATCTTTGTTGGAAGAAATCCGACTAGAAAACGACTTTTATAAAAGAGACACAGTTTCAATGGGTTTCGGAGCTGATCCCGAGCTTGACAATTTCATGGTAACGTACTGTGACATCTTGGCCAAATATAAATCAGATCTTGCAAGGCCTTTCGATGAAGCAACAACGTTCTTGAAAAAGATTCAGTCACAGCTTAGTAGCCTCTCCACCGGTGCCTCCGCGAGAAGCCCTTCCGGGGATGTCGCAGAATCTTCAGATGATGATAATGGCGGAAGAGAGCAGGCAGAGGAGCAAGAGGGTTTAAGGAGAGGAGAGGGAAATCATCTGAAAGACGTGCTGTTTCGCAAGTTTGGCAGACAGATCGGAAGCTTAAAAGTGGAATTCTCAGAAGGTGATAAGATAGCACTGGCGGAGGCGACGGGGCTGGACCAGAAGCAAATCAATAACTGGTTCGTTAATCAACGGAAGCGCCACTGGAAGGCTTCTGAGAATATGCAGTTTGCTTTGTTGGATAATATGCCTCCGCCATTCTTTGGAGATTGA | 1071 | 46.03 | MLLFHSAIGIAPVLSKSKRIYSHTQHEGLRLSPPLLLQQLQANLFYLKISIMDDFYGLQSGGEFSEKAMISPENHILPVNYQNSFSYGAFRDRFPILGSDELLSAASVVFEAEAASVTPEIQREEDTVSMIKAKIASHPCYPRLLDTYIDCQKKDKFMVLSSCNFFGGQVGAPPEIASLLEEIRLENDFYKRDTVSMGFGADPELDNFMVTYCDILAKYKSDLARPFDEATTFLKKIQSQLSSLSTGASARSPSGDVAESSDDDNGGREQAEEQEGLRRGEGNHLKDVLFRKFGRQIGSLKVEFSEGDKIALAEATGLDQKQINNWFVNQRKRHWKASENMQFALLDNMPPPFFGD | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13413309 | 13419843 | + | Bda007796.1 | Bda11g01278 | 16386 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g01278 | 356 | Pfam | KNOX1 domain | 131 | 187 | IPR005540 | GO:0003677|GO:0005634 | |
Bda11g01278 | 356 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 | 52 | 305 | - | - | |
Bda11g01278 | 356 | SMART | KNOX1_2 | 129 | 189 | IPR005540 | GO:0003677|GO:0005634 | |
Bda11g01278 | 356 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 306 | 347 | - | - | |
Bda11g01278 | 356 | CDD | homeodomain | 296 | 336 | IPR001356 | GO:0003677 | |
Bda11g01278 | 356 | ProSitePatterns | 'Homeobox' domain signature. | 312 | 335 | IPR017970 | GO:0000981|GO:0006355 | |
Bda11g01278 | 356 | SMART | KNOX2_2 | 195 | 246 | IPR005541 | GO:0003677|GO:0005634 | |
Bda11g01278 | 356 | MobiDBLite | consensus disorder prediction | 257 | 280 | - | - | |
Bda11g01278 | 356 | SMART | ELK_2 | 284 | 305 | IPR005539 | GO:0003677 | |
Bda11g01278 | 356 | MobiDBLite | consensus disorder prediction | 245 | 280 | - | - | |
Bda11g01278 | 356 | Pfam | KNOX2 domain | 200 | 244 | IPR005541 | GO:0003677|GO:0005634 | |
Bda11g01278 | 356 | SUPERFAMILY | Homeodomain-like | 305 | 349 | IPR009057 | - | |
Bda11g01278 | 356 | SMART | HOX_1 | 277 | 341 | IPR001356 | GO:0003677 | |
Bda11g01278 | 356 | ProSiteProfiles | 'Homeobox' domain profile. | 305 | 337 | IPR001356 | GO:0003677 | |
Bda11g01278 | 356 | Gene3D | - | 267 | 344 | - | - | |
Bda11g01278 | 356 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 | 306 | 347 | - | - | |
Bda11g01278 | 356 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 52 | 305 | - | - | |
Bda11g01278 | 356 | Pfam | Homeobox KN domain | 305 | 333 | IPR008422 | GO:0003677|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g01278 | Bda-Chr11:13413309 | Bda15g00550 | Bda-Chr15:8647777 | 9.11E-83 | dispersed | |
Bda11g01278 | Bda-Chr11:13413309 | Bda01g00605 | Bda-Chr1:33054749 | 1.31E-53 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g01278 | - | - | vri:117903949 | 331.257 |