Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01279 ATGGCTTCGGTTCAGCTCTGTTATCCGTCGTTGCGCACTGCACGTTTCCGGTGGACGCCGAGACTGGTTCAGTGCGCTAGCGAACGCCAGGCCCTTTTTGGTCGCATTGCTCCTGTCTATGACAATTTGAACGATGTCTTGAGCTTGGGTCAGCATCGAATATGGAAAAGAATGGCAGTAGCGTGGAGTGGGCAAGTAACAAAAAGGGGAGATTGCGTTTTGGATGTGTGCTGTGGAAGTGGAGATTTAGCGTTCCTTTTGTCTGAGAAAGTTGGTTCAGATGGCAAGGTGACAGGCCTTGATTTCTCAAAGGAGCAACTGGAGATTGCAGCCTCTCGTCAACATTCCCTTTTCAAATCCTTTGATAATATAGAGTGGGTCGAAGGAGATGCAATGAATTTGCCATTTCCTGATGACTCTTTTGATGCTATTTCCATGGGGTACGGGCTTAGAAATGTAATGGATAAACAGAAAGCCATGAAAGAGATGCTTAGAGTTTTGAAATATGGTTCAAAAGTATCAATCCTTGACTTCAATAAAAGCACCCAACCTCTTATTTCCTCACTTCAGGAATGGATGATCAGTAATATTGTCGTCCCTGTTGCATCTGGTTATGGCCTTACTCAGGAATATCAATATTTGACCAAGTCCATCAAAGAATTTTTAACAGCAGGTAAAGAATTGGAGAACCTTGCACTGGAAGCTGGATTTTCTACTGCAGTCCATTACGAAATCAGCGGAGGCCTCATGGGTAATCTAGTCGCGACCAAGTAA 774 44.32 MASVQLCYPSLRTARFRWTPRLVQCASERQALFGRIAPVYDNLNDVLSLGQHRIWKRMAVAWSGQVTKRGDCVLDVCCGSGDLAFLLSEKVGSDGKVTGLDFSKEQLEIAASRQHSLFKSFDNIEWVEGDAMNLPFPDDSFDAISMGYGLRNVMDKQKAMKEMLRVLKYGSKVSILDFNKSTQPLISSLQEWMISNIVVPVASGYGLTQEYQYLTKSIKEFLTAGKELENLALEAGFSTAVHYEISGGLMGNLVATK 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13421198 13423059 + Bda007797.1 Bda11g01279 16387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01279 257 Gene3D Vaccinia Virus protein VP39 35 257 IPR029063 -
Bda11g01279 257 CDD AdoMet_MTases 73 175 - -
Bda11g01279 257 Hamap Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 26 257 IPR004033 GO:0008168
Bda11g01279 257 ProSitePatterns ubiE/COQ5 methyltransferase family signature 1. 40 55 IPR023576 GO:0008168
Bda11g01279 257 PANTHER 2-PHYTYL-1,4-BETA-NAPHTHOQUINONE METHYLTRANSFERASE, CHLOROPLASTIC 17 257 - -
Bda11g01279 257 TIGRFAM MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 31 257 IPR004033 GO:0008168
Bda11g01279 257 ProSiteProfiles UbiE family SAM-binding methyltransferase profile. 24 257 IPR004033 GO:0008168
Bda11g01279 257 PANTHER METHYLTRANSFERASE 17 257 - -
Bda11g01279 257 Pfam ubiE/COQ5 methyltransferase family 30 255 IPR004033 GO:0008168
Bda11g01279 257 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 24 248 IPR029063 -
Bda11g01279 257 Hamap 2-phytyl-1,4-naphtoquinone methyltransferase [menG]. 28 257 IPR032904 GO:0042372|GO:0052624
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01279 K23095 MENG, menG; demethylphylloquinol methyltransferase [EC:2.1.1.329] - twl:120007078 363.999
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01173 Bda-Chr4:62376391 Bda11g01279 Bda-Chr11:13421198 1.74E-06 dispersed
Bda11g01279 Bda-Chr11:13421198 Bda13g00741 Bda-Chr13:8931403 1.14E-31 dispersed
Bda11g01279 Bda-Chr11:13421198 Bda10g00709 Bda-Chr10:41480078 3.04E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g655 . Blo16g01166 . Bda11g01279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01279 . . . . . . . . . . Car05g00026 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006920 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01279 Bda_Chr11 FPKM 4.003163 4.124915 13.441666 12.825553 1.532729 1.62794 2.276181 37.599419 39.164005
Bda11g01279 Bda_Chr11 FPKM 4.694349 4.341613 13.141441 11.339166 1.103673 1.626003 1.432558 43.166504 44.229668
Bda11g01279 Bda_Chr11 FPKM 3.87258 3.401579 11.080048 9.634324 0.876212 1.298018 1.240411 35.03915 36.511372