Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01292 ATGCATGATTCAATCAGAATTCCTGCTTGCTTCTCCTCCAGCGAGAAAGAGACGGAAAATGACCCAGCGACTGCAATCAGATCAGGCCAAAGCGTGTTCATGTCAGTTTATCAAACGAAAATCTCCGGCCGGTGTCGCTTCATAACCATCACATGGTGCAAGAATCTGCTCTTACATGGGTTATCAGTTTCAGTTCAAGGATCAGAAAGAGACGAGGATTATCTCTGCAAAGTCGAGCTTAAACCATGGTATTTCTGGAGAAAACAAGGATCCAAGCACTTCCAAGTAGACGGTAGAACAGTAGCTGTGGTCTGGGATCTCAAGGCTGCAAAGTTCAACGGAGAGACCGAGCCTCAGTCTGATTACTACGTTGCCATTATTTCCGACGAAGAGGTCGTTCTGCTCGTCGGCGATCTAAAGAAAGACGCCTTCAGAAAAACCGGCTGCCGGCCGGCGCTTATCGACCCGTTACTGGTTTCGAAGAAAGAACACGTGTTTGGAAAGAAGAAATATTTTACGAGAATTCAGTTCCACGAGAGGGGGAAGTTTCACGCGATTTCAGTGGAGTGCATTAATGGCGGTGTAAATTATTCAGATTCAGACGGGAATGATCCTGAATTAGAGATAAGAGTAGATGGGCAGACTGCGCTATACGTAAAGCATCTTCAATGGAAATTCAGAGGGAATGATTTCATTATCATAAACCAGACAAGACTGGAAATTTATTGGGACGTCCACGATTGGCTATTCTGCTCCGGTCCGAGAAACGGTCTTTTCATATTCCGGCCAGTTTCATTAACTTCATTGCCATCATCGTCCGTAACAACATTACCTCCACCATCGTTGCTGGTTCAAGACGTGCTCGCGGCATCAGAGGAAATTTACGGAGGTGGGTTGTCCAAATTTTGCCTGTTTCTCTACGCTTGGAAGTTAGAATGA 939 45.58 MHDSIRIPACFSSSEKETENDPATAIRSGQSVFMSVYQTKISGRCRFITITWCKNLLLHGLSVSVQGSERDEDYLCKVELKPWYFWRKQGSKHFQVDGRTVAVVWDLKAAKFNGETEPQSDYYVAIISDEEVVLLVGDLKKDAFRKTGCRPALIDPLLVSKKEHVFGKKKYFTRIQFHERGKFHAISVECINGGVNYSDSDGNDPELEIRVDGQTALYVKHLQWKFRGNDFIIINQTRLEIYWDVHDWLFCSGPRNGLFIFRPVSLTSLPSSSVTTLPPPSLLVQDVLAASEEIYGGGLSKFCLFLYAWKLE 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13632829 13633767 + Bda007814.1 Bda11g01292 16400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01292 312 Pfam Plant protein of unknown function (DUF868) 28 310 IPR008586 -
Bda11g01292 312 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 5 312 - -
Bda11g01292 312 PANTHER EXPRESSED PROTEIN 5 312 IPR008586 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01292 - - - mcha:111005191 455.292
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02204 Bda11g01292 CCT
Bda01g02204 Bda11g01292 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01292 Bda-Chr11:13632829 Bda14g00793 Bda-Chr14:6135401 4.08E-123 dispersed
Bda07g01213 Bda-Chr7:14602546 Bda11g01292 Bda-Chr11:13632829 1.78E-65 transposed
Bda12g00016 Bda-Chr12:100702 Bda11g01292 Bda-Chr11:13632829 2.61E-59 transposed
Bda01g02204 Bda-Chr1:57923641 Bda11g01292 Bda-Chr11:13632829 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g633 Blo01g00381 . Bda01g02204 Bda11g01292 Bpe13g00511 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01292 . . . Bma06g00597 . . . . Cma05g00046 . Car05g00035 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001841 6 1 3 2 4 2 2 2 2 2 1 2 2 1 2 3 2 5 2 2 2 2 2 2 1 2 1 2 3 3 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01292 Bda_Chr11 FPKM 2.313068 1.887603 1.687712 1.480231 4.379345 4.451538 4.543705 2.654367 2.556737