Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01297 ATGTCTAGAAATGATGTGGGAGAGGATCTACACAAGAAAACAATGTTCTTGTTTGATTTGCTAGGAGACTACAGATGGGAAGAAAAAGTGGTTTTAGCCCTCACAGCATTTGCAGTGAGCTATGGAGAATTTCGGCTGCTAATACAACTAAGTCTCAGTAACCCAATTGCAGCATCAATCACAATGCTCAAGCAGATGCCAAGAGATATAACTAAGTTTAAGCTTCAATTCAAGACTTTGACCATGGTGGTTAAATCTCTGATGGATTTAGCAGAGTGTATCATCAAGTTTGAAGGCCAGCCATTTTCACAAGTAGAATTGGATTATGATATGAAATCCACTGCAAAAACTCATACCTATATAGCTACTTACTGGGTTATGAGAAGCTGTCTAATATGCTATTCTCAGATCAAAGCTTTGATGGGCTTCTTTTTCAGGAGTTATAATTTGACAGCAATTGCATCGTGGGAGCTCTCGAGTCTGGTAATTCGCCTTAGTAGAATATGCAAACAGTTAAACCAACAAGTTGAAATATGCGATCGGATGATGGAAACAAAATTACTCCAGAAGTTGATTAATCTTTTCGAGGAAACACAAGCCGATGGCAATCAAGAGGTTCTTCGAATGTTGTTTGGTTTGAGCGAGGAGTTTCCGCTCCAAAAACACTCTTCGGAAGAAAAGCTGGGGATTTTGGAGCTGATAAACAAGGTGGTAATACTATTAATCTCAAAGCCAGACCTCCTTCCCAAAGAAAGAACACTCTTCATTGTTCAACAAACAACTGATCATCCTCACAGAGAAAGTTCAGAAGGAAGTTTTGAAGTCATATGGGTTTCTATTTCACTTTCTGATTCTTGGACTGATGCTGAAAAGATTCATACTCAACTTCTTTCCAAATCTTTGCCTTTCTACTCAATTCGACAGCCATGGCTACTCAATGCCGCCACCGTTAAGTTCATAAAAGAAAAGTGGAAATTCGTAGACGAGCCAGTTATGTCTGTGTTGGATTCAAACGGGAGAGTCTCGAACTCAAATGCATTCGATATGGTGTCTATTTGGGGAGGCGGGGCATATCCCTTCTCAGTTTTAAGAGAAAAGGAGCTATGGTTAGAGCAGAACTGGACACTCCAACTTTTGATAAATGGCATTGACCCTCTACTTACCAAGTGGGTCGAAGAAGGTAGAATTGTTTGCATTTATGGAAGCTGCAGTCTGAAGTGGATTCGAGAATTCACCGACAGAATGAAAGAAATGGAGAAGGAAGGTGTGCAGATTGAGATTGTATATGTTGGTTGGAGGAATCCAGTCCAAGATTTGAGGACCATTTTAGGCGTTGTTGATGCAGAAAAGATCAGCAGATCATTATCATTCACGAAAATATGCTTTTTCTGGATTAGATTGGAAAGCATAAGAAGATCAAAGCTCAGGCTCAACAATCCAAATGATCATATTCTAGAAAAGGTGTCGGAAATGCTGAATATCAGCAAAGAAAATGAGATTGAGGACGGCTGGGCAGTGATAGGATCAGGCTCTTGCTCAGATACACTGAAGCTTCAAGGATCAAAGCAGATGGAATGCTTGAATTTGTTTCCTAAGTGGAAAGAAAATGTGGGAAAGTTTGGATTTTTAGGTGCCCTTAGGACTGCCATTAATCCTCCTCTTCTTTCAGGGCCCTGTGGCCACTCAAAGGTTGTTTCATATTGTGAAGACGTAGAGGAAAGGTGTGTAGTTTGTGACAAGTGTAACCGAATCATGGAAAAATTTGTCGTCTACGAATGA 1779 40.25 MSRNDVGEDLHKKTMFLFDLLGDYRWEEKVVLALTAFAVSYGEFRLLIQLSLSNPIAASITMLKQMPRDITKFKLQFKTLTMVVKSLMDLAECIIKFEGQPFSQVELDYDMKSTAKTHTYIATYWVMRSCLICYSQIKALMGFFFRSYNLTAIASWELSSLVIRLSRICKQLNQQVEICDRMMETKLLQKLINLFEETQADGNQEVLRMLFGLSEEFPLQKHSSEEKLGILELINKVVILLISKPDLLPKERTLFIVQQTTDHPHRESSEGSFEVIWVSISLSDSWTDAEKIHTQLLSKSLPFYSIRQPWLLNAATVKFIKEKWKFVDEPVMSVLDSNGRVSNSNAFDMVSIWGGGAYPFSVLREKELWLEQNWTLQLLINGIDPLLTKWVEEGRIVCIYGSCSLKWIREFTDRMKEMEKEGVQIEIVYVGWRNPVQDLRTILGVVDAEKISRSLSFTKICFFWIRLESIRRSKLRLNNPNDHILEKVSEMLNISKENEIEDGWAVIGSGSCSDTLKLQGSKQMECLNLFPKWKENVGKFGFLGALRTAINPPLLSGPCGHSKVVSYCEDVEERCVVCDKCNRIMEKFVVYE 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13679573 13681699 + Bda007819.1 Bda11g01297 16405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01297 592 Pfam Sieve element occlusion N-terminus 6 198 IPR027942 -
Bda11g01297 592 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION C 7 592 - -
Bda11g01297 592 Pfam Sieve element occlusion C-terminus 364 592 IPR027944 -
Bda11g01297 592 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 7 592 IPR039299 GO:0010088
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01297 - - - rcu:8285466 610.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01297 Bda-Chr11:13679573 Bda13g01637 Bda-Chr13:39869181 2.21E-104 dispersed
Bda11g01297 Bda-Chr11:13679573 Bda11g01298 Bda-Chr11:13683219 5.55E-102 tandem
Bda11g01297 Bda-Chr11:13679573 Bda12g00482 Bda-Chr12:6418411 6.41E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g604 . . . Bda11g01297 Bpe13g01491 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018063 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01297 Bda_Chr11 FPKM 2.050063 2.985532 3.767644 4.189726 2.306974 2.64485 2.666725 10.402484 10.229341