Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01298 CAGATACTGTGTAAGTGTTCAATGGGTGGAGATGCCCATCAAACAACTTTAGCAATATTCAATTTGGTTTCAAATTACTCGTGGGATGCAAAAGTTGCACTGGCCTTGGCAGCTTTTTCCATTGCCTATGGAGAATTTTGGCTGCTGGCTCAGCTTTATCCCACCAACTCACTTGCCAAGGACATTGCTCTCCTCAAACAATTACCTGAAGTGTTCGAGCGAGGGGAGGCCATGAAACCGAAGTTTGAGGCACTTACCAACCTTATAAAGGCAATGGTGGATGTAGCCAAGCGAATTGTCGAATTTAAGCTGCTTCCCTCTCAGTACATTAGCCCAGACACTCCTGAAATGGTGACTGCAACTACTCTTATCCCCACGGCTGCATATTGGACAATTCGGAGCATTGTGGCCTGTGCCTCCCAAATTTCTACAGGCCTCGTCAGCTTTGGCCATGAATTCGCAACGTCGACAGCCGAGGCTTGGGAGTTGTCGAGCCTGGCCCATAAGGTAAACAGCATACACAAGCACCTCCTGGAGCAACTTTCAATTTGTCATCGAATCATAGATGAGAAAAGATACAACGAAGCATTTCTGTTGCTCGTTCGCCTCTTCGAGACTCCCCATATCGATAACATGAAGATCATCAAGTATTTGATCTACAACAAGGATGACCAGCCGCCACTTATCGAAGGCTCTACGAATAAGAAGGTCAGTGTCGATGTGCTGAGAAGGAGGCTCGTGTTGTTACTGATCTCCGACCTGAACATGCCTCATACAGAGCTTTCAATACTTAACACAATGTATCAAGATTCGAGGCAGCAACAAGGGCGGCCAGAGAATGAATATGAGATAGTGTGGCTTCCGGTGGTTGACAGGTCGACCCAATGGACTGAAATTCATCAAAAGAATTTTGATGCACTGAAAATCAATATGCCATGGTACTATGTGGCTCACCCTTCTTTCATTGAGCCGGCAGTCATCAGATACATCAAAGAGATATGGCGGTTCAACAAGAAGGCTCTGCTGGTTGTGTTAGATCCTCAGGCAAAAGTGTTGAACTTAAACGCCATCCACATGATTTGGATCTGGGGAAGCTTGGGTTACCCTTTCAGTAGCGCAAGAGAAGAAGCTCTCTGGAAAGAAGAGACATGGAAGATCGAGCTGCTGATGGACTCGATCGAGCCACTGATATTCAACTGGATTGGAGAGGGGAAGTATATTTTCTTATACGGAGGAGAAGATATAGGATGGATTAGGAGATTTACAGCTTCAGCAAGAGACATTTCACTGAAGGCGAAAATACCTGTAGAGATGCTGTATGTGGGGAAGAGCAACCCCGGAGAGAAAGTGCGGAGGAATATCAGCACCATTTTAGCTGAAGGGCTAGGAAATGTGCTGCCTGATCTGAATCTGATTTGGTTCTTCTGGGTAAGGCTGGAAAGCATGTGGTACTCCAAATCAAAACAGGGGAAGAGCGTGGAGGACGATTACATAATGCAGGAGACGATGACGATGCTAAGCTTCGATAGCAGTGACCAGTGCTGGGCGGTGATAATCAAGAACTCCGGCGACTTCGCCAGAGGGAAAGCGGAAACCATAACGAAATGCTTCGAGGACTTTGAAATTTGGAGAGAGAAGGCGAAGGAAAAAGGATTCATGCAAGCTCTGAGAGAACAGCTGCAGGAGCTCCACACCCCACTGCACTGCAATCGCCTCATTTTGCCATCCTCCAACGGGACGATTCCAGAGAGGGTGGTGTGCTCTGAATGTCGCCGTCCGATGGAGAAATTCGTAATGTATCGCTGCTGCACAGACTGA 1818 47.08 QILCKCSMGGDAHQTTLAIFNLVSNYSWDAKVALALAAFSIAYGEFWLLAQLYPTNSLAKDIALLKQLPEVFERGEAMKPKFEALTNLIKAMVDVAKRIVEFKLLPSQYISPDTPEMVTATTLIPTAAYWTIRSIVACASQISTGLVSFGHEFATSTAEAWELSSLAHKVNSIHKHLLEQLSICHRIIDEKRYNEAFLLLVRLFETPHIDNMKIIKYLIYNKDDQPPLIEGSTNKKVSVDVLRRRLVLLLISDLNMPHTELSILNTMYQDSRQQQGRPENEYEIVWLPVVDRSTQWTEIHQKNFDALKINMPWYYVAHPSFIEPAVIRYIKEIWRFNKKALLVVLDPQAKVLNLNAIHMIWIWGSLGYPFSSAREEALWKEETWKIELLMDSIEPLIFNWIGEGKYIFLYGGEDIGWIRRFTASARDISLKAKIPVEMLYVGKSNPGEKVRRNISTILAEGLGNVLPDLNLIWFFWVRLESMWYSKSKQGKSVEDDYIMQETMTMLSFDSSDQCWAVIIKNSGDFARGKAETITKCFEDFEIWREKAKEKGFMQALREQLQELHTPLHCNRLILPSSNGTIPERVVCSECRRPMEKFVMYRCCTD 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13683219 13685354 + Bda007820.1 Bda11g01298 16406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01298 605 Pfam Sieve element occlusion N-terminus 1 208 IPR027942 -
Bda11g01298 605 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 2 605 - -
Bda11g01298 605 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 2 605 IPR039299 GO:0010088
Bda11g01298 605 Pfam Sieve element occlusion C-terminus 374 604 IPR027944 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01298 - - - pop:18102417 855.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01298 Bda-Chr11:13683219 Bda13g01637 Bda-Chr13:39869181 0 dispersed
Bda11g01297 Bda-Chr11:13679573 Bda11g01298 Bda-Chr11:13683219 5.55E-102 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g603 . . . Bda11g01298 Bpe13g01492 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01298 . . . Bma06g00593 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010997 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 1 3 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01298 Bda_Chr11 FPKM 51.674934 54.684448 52.724995 57.507557 38.806313 41.745022 41.822029 60.339588 62.916149