Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01299 ATGGATCGTGCTTTACACTCAATTGCTGCTCATTTAGCAACTTCTGTGCTGCCGTTTCAACGAAGTCAACAGCATTGCTACAGAGAGTCAGTTCCCGGGGAATTTCGTTTGGCTGCATATCCCTCCATTCTCCTGCATATCCTTTCTTCTTGTAATTTGAACTCACGTGAACTTGCAATATTAGAGGCAACATGTTCCTTCTTCAAGCAGCCTGCTAATTTCCACCCTGATTTCCAGCTATCCATTTCAGAACTTGCTGCTTTCGATATGTGCAGAAAGAGAGCTATATTTAAGCCGATGACGATGGAAGAGCAAAAGCATTTGAAGCAAAGATGTGGAGGTTCATGGAAACTGGTATTAAGGTTCCTGATGGCTGGAGAAGCATGTTGCCGGAGGGAGACATCTCAGGCCGTAGCCGGACCAGGTCATAGTATAGCCGTTTCTTCAAAAGGCATCGCCTATACTTTCGGGTCTAACACCTTAGGACAGCTAGGACATGGCACCATCGAAGAAGAATGGCGGCCTCGACCAATCAGATCTCTGCAAGGTATTCGAATTATCCACGCAACAGCAGGGGTGGGGAGGACGATGCTAATTAGCGATGTTGGCGAGGTATATGCCACTGGGGACTGCTTTGTTGAGGCTAACTATGAGCTTGAAAGGTCTAAAATGGCTTCTACTCCAGTGCTGGTTGATGCTTTAAAGAACATTTTTGTGGTGCAAGCTGCAATTGGAAACTTCTTCACTGCTGTGTTGTCAAGAGAAGGCAGAGTTTACACATTTTGTTGGGGCAGTGAGGCTAAACTCTGTCACCAAACTGATCCGGTCGATATCGAGCCTCGCCCTTTGTTGGGAGCTCTTGAAAACATACCAGTTGTTCAAATAGCAGCTGGATATTGCTTTCTTCTTGCTCTGGCATTTCAACCCGGCGGCATGTCAGTTTATTCTGTGGGGTGTGGCTTGGGAGGGAAGCTAGGCCATGGTTCGAGAAGCGACGAGAAGCAACCAAGGCTGATCGAACAGTTTGGGGCTTTGAAGCTTCAGCCTGTGGCGGTTGCAGCAGGTGCTTGGCATGCAGCCGTGGTGGGGCATGACGGTCGAGTCTGCACGTGGGGGTGGGGGCGTCACGGGTGCTTGGGTCATGGAAACGAAGAATGTGAATCACGTCCGAAGGTGATCGAGTCATTGAGCCATGTCAAAGCCGTCCATGTCGCAACTGGCAATTACACAACTTTCGTCGTAGCCGATGATGGCGATGCATACTCTTTCGGGTGCAGAGAATCTTCTAATCTCGGTCATAATAGCCCTGCTGATGGACAGGAAAACAGGTATGCAAATGTGTTGAGCCCAAAGCTTGTTAAATCATTGAAGGGAGGGAAGGAGAGGGTTGTGCAGATAAGCCTCACTAATTCTGTTAACCATAACGCTCACACATTTGCACTGACTGAGTCAGGGAAGCTCTACGCTTTTGGAGCCGGAGATGAAGGGCAGCTCGGGGTGAAGCTCGGGTCTAACCAAACCCAAAGGGAGGGACCAGCACTTGTTGATATTGATCTAAGCTAG 1563 48.75 MDRALHSIAAHLATSVLPFQRSQQHCYRESVPGEFRLAAYPSILLHILSSCNLNSRELAILEATCSFFKQPANFHPDFQLSISELAAFDMCRKRAIFKPMTMEEQKHLKQRCGGSWKLVLRFLMAGEACCRRETSQAVAGPGHSIAVSSKGIAYTFGSNTLGQLGHGTIEEEWRPRPIRSLQGIRIIHATAGVGRTMLISDVGEVYATGDCFVEANYELERSKMASTPVLVDALKNIFVVQAAIGNFFTAVLSREGRVYTFCWGSEAKLCHQTDPVDIEPRPLLGALENIPVVQIAAGYCFLLALAFQPGGMSVYSVGCGLGGKLGHGSRSDEKQPRLIEQFGALKLQPVAVAAGAWHAAVVGHDGRVCTWGWGRHGCLGHGNEECESRPKVIESLSHVKAVHVATGNYTTFVVADDGDAYSFGCRESSNLGHNSPADGQENRYANVLSPKLVKSLKGGKERVVQISLTNSVNHNAHTFALTESGKLYAFGAGDEGQLGVKLGSNQTQREGPALVDIDLS 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13695091 13697380 - Bda007821.1 Bda11g01299 16407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01299 520 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 7 520 - -
Bda11g01299 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 417 IPR000408 -
Bda11g01299 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 151 202 IPR000408 -
Bda11g01299 520 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 352 362 IPR000408 -
Bda11g01299 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 365 IPR000408 -
Bda11g01299 520 SUPERFAMILY RCC1/BLIP-II 134 436 IPR009091 -
Bda11g01299 520 Pfam Regulator of chromosome condensation (RCC1) repeat 151 199 IPR000408 -
Bda11g01299 520 Pfam Regulator of chromosome condensation (RCC1) repeat 314 362 IPR000408 -
Bda11g01299 520 Pfam Regulator of chromosome condensation (RCC1) repeat 417 467 IPR000408 -
Bda11g01299 520 Pfam Regulator of chromosome condensation (RCC1) repeat 365 414 IPR000408 -
Bda11g01299 520 SUPERFAMILY RCC1/BLIP-II 444 505 IPR009091 -
Bda11g01299 520 PRINTS Chromosome condensation regulator RCC1 signature 480 501 IPR000408 -
Bda11g01299 520 PRINTS Chromosome condensation regulator RCC1 signature 314 328 IPR000408 -
Bda11g01299 520 PRINTS Chromosome condensation regulator RCC1 signature 152 168 IPR000408 -
Bda11g01299 520 PRINTS Chromosome condensation regulator RCC1 signature 407 425 IPR000408 -
Bda11g01299 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 418 484 IPR000408 -
Bda11g01299 520 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 7 520 - -
Bda11g01299 520 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 485 520 IPR000408 -
Bda11g01299 520 Gene3D - 130 307 IPR009091 -
Bda11g01299 520 Gene3D - 308 519 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01299 - - - jre:108990808 787.719
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01651 Bda11g01299 CCT
Bda07g01651 Bda11g01299 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00499 Bda-Chr9:6628113 Bda11g01299 Bda-Chr11:13695091 1.38E-07 dispersed
Bda11g01299 Bda-Chr11:13695091 Bda10g00373 Bda-Chr10:35262975 2.13E-09 dispersed
Bda11g01299 Bda-Chr11:13695091 Bda07g01651 Bda-Chr7:30732809 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01299 Bda_Chr11 FPKM 10.863195 11.644143 15.507945 13.657663 13.880669 15.540053 17.15489 20.985388 20.976772