Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01309 ATGTCGGCTAACATATTTTGTAGGAGCAAAGTCCGAAAGAGAGGTCAAAAGAGGACGCGACAGCAAAGATTTGCGTTTCTAACCAAGAGTGACATCGATCATCTTGAAGATGGGTATAGATGGAGAAAATATGGACAGAAAGCTGTTAAAAATAGTCCATTCCCAAGCAGGAGTTACTACCGCTGCACAAACGGCAAATGTACTGTGAAGAAAAGGGTTGAGCGTTCATCGGAAGATCCCACCATTGTTGTAACCACATACGAAGGTCAACATTGCCATTACACTGTAGGATTGTCTCGAAGCGGAGTCATTGGCCATGCAGCTTCCTTTGATGGTCAGTTTCCGCCTCTCGTCCCCCATTTCTATTGCCCTGAACTTAACCTTCCAGCGGAGAATCCACTTATTGTGCCACAGTTACAGCCGGACAATCATCCAGGCGGAATATCTAATGTGATTTCAGAGACGACTTCGCAGCTTGTTCCTCCTGATCAAGGATTGCTAGGCGACATTGTGCCAAGTGGAATACGTAAAAGATGA 537 45.44 MSANIFCRSKVRKRGQKRTRQQRFAFLTKSDIDHLEDGYRWRKYGQKAVKNSPFPSRSYYRCTNGKCTVKKRVERSSEDPTIVVTTYEGQHCHYTVGLSRSGVIGHAASFDGQFPPLVPHFYCPELNLPAENPLIVPQLQPDNHPGGISNVISETTSQLVPPDQGLLGDIVPSGIRKR 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14181980 14183173 - Bda007830.1 Bda11g01309 16417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01309 178 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 10 102 - -
Bda11g01309 178 SUPERFAMILY WRKY DNA-binding domain 28 94 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda11g01309 178 Gene3D WRKY domain 22 89 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda11g01309 178 Pfam WRKY DNA -binding domain 36 93 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda11g01309 178 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 102 IPR044810 GO:0003700
Bda11g01309 178 ProSiteProfiles WRKY domain profile. 30 96 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda11g01309 178 SMART WRKY_cls 35 95 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02132 Bda-Chr1:57313980 Bda11g01309 Bda-Chr11:14181980 7.19E-106 dispersed
Bda11g01309 Bda-Chr11:14181980 Bda13g00224 Bda-Chr13:2849666 2.10E-44 dispersed
Bda11g01183 Bda-Chr11:12207069 Bda11g01309 Bda-Chr11:14181980 2.56E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16683 PF03106 WRKY 3.30E-23 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01309 - - zju:107428893 224.557