Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01353 ATGAGACCTTCATCTTCCAGCCTTCTTCTCCATTTTTTTGCTTCTTCTTCCTTTCCTTCATCCTCACAGGCCCCTCTTTTCTTGCTTCAGTTTTCCTGCTTTTCAACTTCTTCAACTTCTTCTTCATTCCATTCTTCTTCTTCTTCTTCTTCTTCTAAGCGGCTCGATGTGGATTCCCGAGATGTGAAGGTTTCAGTGTGGTGGGACTTTGAGAATTGCCATTTACCTGCTGGAGTGAACGTGTTCAAGGTTTCCCATTTGATTACATCAGCGCTTAGGTTTAATGGAATCAAAGGTCCTGTACAGATTACAGCATTTGGGGATGTATTACAGCTCTCAAGGACGAATCAGGAGGCTCTCTCCGCAACGGGGATCAATCTTACCCATGTGCCTCAAGGTGGAAAAAATAGTGCTGACAGGTCTCTTCTTGTAGATCTCATGTATTGGGTTTCTCAAAATCCTCCCCCAGCACATCTCCTTTTGATCTCGGGCGACAGGGACTTTGCCAGCATTTTACACCGATTAAGAATGAACAACTACAACATATTGCTTGCAAGTACAGAAAAGGCTCCTGGTGTTCTGTGCAGTGCTGCAAGTATAATGTGGCACTGGAATGCGTTGATTAAAGGAGAGACTCTTGTCGGAAAGTGCTTTAACCAACCACCAGATGGTCGATTTGGTTCTTGGTATAATCAACATAAAGGCCCTCTTGAAGATCCCTATACAGCTATGGAGCAACCATCTTATTCGCGAGTAGAAGAGTTGCCTGAGCCAGATTCTGAATTGAAGCTTCGTCCCATTCCAAAGGCTGTCTTGAAGCAGATTCGTCAAATTTTGAAATCGTATCCCAAAGGAGTTTCCCTTTGGGAGCTTCGCTCAGAGTTGGCAAAAAGTAATGTCTCTATCGATAAAGACTTGTATGGCTATAAAAGATTTTACCGTTTTCTCTGCTCAATGCCGCAAATCTTAAAGATTCAACCTTCTGGCGATGGTCAGTATGTAGTGCTAGCAGTAAATATGAGATCTATAGAACCTTTAGAGTCTAGTCGAGTTACATCTATTGAAACTTTCGGTGATACTAATTCTAATGGTCATAATGTGAGTCTTCAGGGAGAAAATTTTAAACAAAGTTCTCCTTTAGGGAAATCTGAAAGAGAATCTTCAGTTTCCTCGGCTCCTGAGCCAAGTACCATTGAAACTTCAAAGACTTCACAGTCAGATTGTGAAGTACGCAATGTGGTTAGCGGACAGGATGTTTCTGGCTATTTGCTACCCATTTCAGGACAGGATTCTGTGTCTGGTGTAGGCTTTTTAAGAAAGATTTGGAAGAAATGGTTTAGTGAAGATGATAGCGGTACTGTGAATAAAAGTGGTAGTTTACCTGACAATAGTTATGGTGCTGATGTTACATCGAAGAAGGAAAATCACAGAAATGTATGGAAAAAAAAAGCTGAAGAAAAAGATTTGAAATTGACGAGTCAAGATGACCATTTTGTTAATGCTTTACCGAGTAGTGAGTTGGTCTTGAAAGATGAAGACAAAACCTGTACAAAGTCGGGTATAATTGTCCGAGTAGGGAAATGGTTCAGTTTTTGGGCCAGAGGACGCAGTGACAAAGTGAGTGATCAATCTTCTGCTCAACCAAACAAAGAAAACGATCAAGCTAATCATCAGCTGCTTTCTGATAACTCTTTTTGGCATGACCTAGAATCATTCATGAAAACTCCCAAAGCATCAGTTCTCATTTCAGGGTCAAAAACGAGGGAGGAGATGGCAGAAAATTTGCAACAGGAAGGACCCTCGGCTCTTAAGTTGCTCGGTAATTGTGTTCTACTTGACCTGGTGGATCTAGTAATAGCAGACAAAAAATGGGTGGAAGAAAACCCATCTCATGTCTTGCCTTTCAAGCTAACTCTTTCAGGTCAAAATAGTGGTTGTGAAGATTCCATCCACGGTTCAACTCAGCTGAGATCAATTTTTACTAACACACCAGCAAAGCCGAACTTGCAAAGATCTCTACGAAGTGATCCTGATAAGAACAATAAAAACGAACTTCGAACAGATTTTGCCAAAAATAGATCTGCAGAAAGGTCTTCAAGTGAGATATTAGGGGATTGTCAAAAGCTCGTGAATGAGGTTTTAAAAGAACACCCTCAAGGATATAATATGAGCTTCTTTAGAAACCTTTTCTGGGAGAGATATGGATATCATCTTCATGTGAAAAGTCTGGGTTATAAAAAGTTGGCATCCATGCTTGTAACATTACCTGGAGTGAAAATTGAGTCCTCTTTTATCTTTCCTTCAAGCCATTCCCCTGCGTGTGTTCCCTTTGATGAAAAGAAAGAACTTGATCATACGATGGCAAATTCTGAAGGCGAATCATCAGACTCATTGAGAAAGGATGATGATCTTGATTCGCCGTGGGAAGAATTGGGACCTATTGCCAGCACGAGCTTCGGAAGAAACAACGAAGAAAAAGTAGGAAGGAGAGGAAGAAAAGCGACCGAGAAATTATCTCGGGTTGAATATGAATCCCCCTTTTCAGATGATTATTTATCAGACTCTGAAGAAGAGAGCCTTTCAGCTCGCTCTGCAGAGAAGATGAAGGAAAGAGAAAAAGAAGAAAATAGCTCCTTGTTGCAAATTCTTGATTCGTGGTACAATCGCAAAGAAGGGCTGGATAAAAAAGAGGACAAGAGAGAGAATTCTGATGGAATGATCGACTGTTCTGCCAACAATTTCATGAGTTCATCAGAGACTGGTGACATAAATGAAACAAGGGCGGGAGTTATTGGAAACGAGAGGGAGAAATCTGATGGGATGATTGACTTTTCTGCCGATAATTTCAAGCCATCAGGAACAGGCAACATAAGTGAAACAAATGGAAGAAAGCAGAGGCCTCAAAAGAGCTACTCTTTTGTGTTAGACCCAGATGAGAATAACAAGGAGAAGCTCATTGATGGCATAATTGATAGCCTGAAGAAATCTAGCTAG 2994 41.08 MRPSSSSLLLHFFASSSFPSSSQAPLFLLQFSCFSTSSTSSSFHSSSSSSSSKRLDVDSRDVKVSVWWDFENCHLPAGVNVFKVSHLITSALRFNGIKGPVQITAFGDVLQLSRTNQEALSATGINLTHVPQGGKNSADRSLLVDLMYWVSQNPPPAHLLLISGDRDFASILHRLRMNNYNILLASTEKAPGVLCSAASIMWHWNALIKGETLVGKCFNQPPDGRFGSWYNQHKGPLEDPYTAMEQPSYSRVEELPEPDSELKLRPIPKAVLKQIRQILKSYPKGVSLWELRSELAKSNVSIDKDLYGYKRFYRFLCSMPQILKIQPSGDGQYVVLAVNMRSIEPLESSRVTSIETFGDTNSNGHNVSLQGENFKQSSPLGKSERESSVSSAPEPSTIETSKTSQSDCEVRNVVSGQDVSGYLLPISGQDSVSGVGFLRKIWKKWFSEDDSGTVNKSGSLPDNSYGADVTSKKENHRNVWKKKAEEKDLKLTSQDDHFVNALPSSELVLKDEDKTCTKSGIIVRVGKWFSFWARGRSDKVSDQSSAQPNKENDQANHQLLSDNSFWHDLESFMKTPKASVLISGSKTREEMAENLQQEGPSALKLLGNCVLLDLVDLVIADKKWVEENPSHVLPFKLTLSGQNSGCEDSIHGSTQLRSIFTNTPAKPNLQRSLRSDPDKNNKNELRTDFAKNRSAERSSSEILGDCQKLVNEVLKEHPQGYNMSFFRNLFWERYGYHLHVKSLGYKKLASMLVTLPGVKIESSFIFPSSHSPACVPFDEKKELDHTMANSEGESSDSLRKDDDLDSPWEELGPIASTSFGRNNEEKVGRRGRKATEKLSRVEYESPFSDDYLSDSEEESLSARSAEKMKEREKEENSSLLQILDSWYNRKEGLDKKEDKRENSDGMIDCSANNFMSSSETGDINETRAGVIGNEREKSDGMIDFSADNFKPSGTGNISETNGRKQRPQKSYSFVLDPDENNKEKLIDGIIDSLKKSS 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15418332 15422752 - Bda007885.1 Bda11g01353 16461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01353 997 PANTHER EMB|CAB71880.1 26 912 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 787 807 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 451 470 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 787 977 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 823 844 - -
Bda11g01353 997 Pfam NYN domain 63 198 IPR021139 GO:0004540
Bda11g01353 997 PANTHER LIMKAIN B LKAP 26 912 IPR024768 GO:0005777|GO:0010468|GO:1903231
Bda11g01353 997 MobiDBLite consensus disorder prediction 451 468 - -
Bda11g01353 997 CDD LOTUS 268 336 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 906 924 - -
Bda11g01353 997 Gene3D - 57 205 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 856 878 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 888 905 - -
Bda11g01353 997 Gene3D - 268 339 IPR041966 -
Bda11g01353 997 ProSiteProfiles OST-type HTH domain profile. 267 339 IPR025605 -
Bda11g01353 997 Pfam OST-HTH/LOTUS domain 707 762 IPR025605 -
Bda11g01353 997 Pfam OST-HTH/LOTUS domain 269 335 IPR025605 -
Bda11g01353 997 Gene3D - 697 764 IPR041966 -
Bda11g01353 997 CDD LOTUS 703 760 - -
Bda11g01353 997 Pfam OST-HTH Associated domain 586 641 IPR025677 -
Bda11g01353 997 ProSiteProfiles OST-type HTH domain profile. 702 780 IPR025605 -
Bda11g01353 997 MobiDBLite consensus disorder prediction 949 968 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 929 943 - -
Bda11g01353 997 CDD PIN_limkain_b1_N_like 63 186 - -
Bda11g01353 997 MobiDBLite consensus disorder prediction 362 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01353 - - - vvi:100259153 825.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01309 Bda-Chr7:15906323 Bda11g01353 Bda-Chr11:15418332 3.64E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1214 . Blo16g00517 . . . Bpe13g00010 . . . Cmo20g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01353 . . . . Bma06g00530 . . . . Cma20g01079 . . . Cpe16g00066 Bhi10g02348 . . . . . . Cla02g00078 Cam02g0081 Cec02g0083 Cco02g0075 Clacu02g0079 Cmu02g0077 Cre02g0417 Lsi10g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005338 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39