Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01374 ATGGCTGATGCCGAGGATATTCAACCTCTTGTCTGTGACAATGGAACTGGAATGGTTAAGGCTGGGTTTGCTGGTGATGATGCACCCAGAGCAGTTTTTCCAAGTATTGTTGGTCGGCCTAGACATACTGGTGTCATGGTTGGGATGGGTCAGAAAGATGCTTATGTCGGCGATGAAGCGCAATCCAAGAGAGGTATTCTCACTTTGAAATATCCAATTGAGCATGGAATTGTCAGCAATTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAACACCCAGTTCTGCTCACAGAGGCACCACTCAATCCTAAAGCTAACAGGGAGAAGATGACACAAATCATGTTTGAAACATTCAATGTTCCTGCCATGTATGTTGCCATCCAGGCTGTTTTGTCTCTTTATGCCAGTGGCCGTACTACGGGTATTGTGCTGGATTCTGGTGATGGTGTCAGTCACACTGTGCCGATCTATGAGGGATATGCTCTACCCCATGCTATCCTTCGTCTGGATCTTGCTGGTCGTGATCTTACTGATGCTCTCATGAAGATTCTTACGGAAAGAGGGTACATGTTCACTACCACTGCCGAGCGGGAAATTGTTCGTGACATGAAGGAAAAGCTAGCATATGTTGCCCTGGACTATGAGCAGGAACTTGAGACCGCCAAGAGCTCCTCTTCTGTTGAGAAAAACTATGAATTGCCAGACGGACAAGTCATCACGATTGGAGCTGAAAGATTCCGCTGCCCTGAAGTTCTATTCCAGCCATCTCTGATAGGAATGGAAGCTGCTGGAATTCATGAGACTACCTACAATTCCATCATGAAGTGTGATGTGGATATTAGAAAGGATTTGTATGGTAACATTGTTCTCAGTGGAGGTTCAACTATGTTCCCAGGTATAGCAGACCGAATGAGCAAGGAAATCACAGCCCTTGCTCCAAGTAGCATGAAGATTAAAGTTGTGGCACCACCAGAGAGGAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTTAGTACCTTTCAGCAGATGTGGATTTCAAAGGGCGAATACGATGAGTCTGGTCCATCCATTGTTCACAGGAAATGCTTCTGA 1134 45.77 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16934926 16936326 + Bda007928.1 Bda11g01374 16482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01374 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Bda11g01374 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bda11g01374 377 SMART actin_3 7 377 IPR004000 -
Bda11g01374 377 Pfam Actin 5 377 IPR004000 -
Bda11g01374 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bda11g01374 377 Gene3D - 10 371 - -
Bda11g01374 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bda11g01374 377 PANTHER ACTIN 1 376 IPR004000 -
Bda11g01374 377 Gene3D - 140 340 - -
Bda11g01374 377 PANTHER ACTIN 1 376 - -
Bda11g01374 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bda11g01374 377 PRINTS Actin signature 28 37 IPR004000 -
Bda11g01374 377 PRINTS Actin signature 51 62 IPR004000 -
Bda11g01374 377 PRINTS Actin signature 63 85 IPR004000 -
Bda11g01374 377 PRINTS Actin signature 117 130 IPR004000 -
Bda11g01374 377 PRINTS Actin signature 142 161 IPR004000 -
Bda11g01374 377 PRINTS Actin signature 238 254 IPR004000 -
Bda11g01374 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bda11g01374 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00339 Bda-Chr4:48461589 Bda11g01374 Bda-Chr11:16934926 0 dispersed
Bda06g00486 Bda-Chr6:6880846 Bda11g01374 Bda-Chr11:16934926 3.06E-84 dispersed
Bda11g01374 Bda-Chr11:16934926 Bda12g00453 Bda-Chr12:5600631 1.67E-112 dispersed
Bda14g00291 Bda-Chr14:1975728 Bda11g01374 Bda-Chr11:16934926 4.02E-11 dispersed
Bda11g01374 Bda-Chr11:16934926 Bda15g00357 Bda-Chr15:6440329 0 transposed
Bda11g01374 Bda-Chr11:16934926 Bda14g00128 Bda-Chr14:873558 0 transposed
Bda11g01374 Bda-Chr11:16934926 Bda15g00349 Bda-Chr15:6357586 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01374 K10355 - egr:104418150 758.059