Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01401 ATGGAGTTCCGTGGAGTTGTTGGGTTGGATGCTGCTATGGATTCTGAAATGGACCTATCTAGAGTACCGATGCGCACTATGGAAATTCTAGCCTCTTGTCATGCCTTAGTGTTTGTGGACAATAAGCTGGTCGGAGATCCTCTTGAAAAGGCTGCACTTAAGGGAATAGATTGGTCATACAAATCGGACGAAAAGGCCACACCAAAAAAGGGAAGTGGTCATGCTGTGCAGATTGTTCAGAGACACCATTTTGCTTCCCATTTGAAGCGTATGGCAGTTGTTGTCCGGGTTCAGGAGGAGTTTTTTTCTTTTGTAAAGGGTGCCCCCGAAACTATCCAAGAACGACTAATTGATGTGCCTCTATCATATGTTGAAACATACAAGAAATATACAAGACAAGGATCCCGTGTTTTGGCACTTGCATTCAAGTCTATTCCAGATATGACAGTTAGTGAAGCTAGAAGCTTGGATAGGGATATTGTGGAGAGTGACCTTATCTTCGCTGGTTTTGCGGTATTTAACTGTCCGATTAGGGCTGATTCAGCTAAAGTTTTGTCTGAATTAGGAGGATCATCACATGACATGGTGATGATAACTGGTGACCAGGCTTTAACAGCTTGCCATGTTGCTGGCCAAGTGCATATCATATCCAAACCAGCGTTAATTCTTACCCAAAAAAGGGAACGTGAAGGATATGAGTGGATATCCCCTGATGAGAAGGAAACAATTCCATACAGTGAGAAAGAGGTTGAAACGTTATCAGAGACTCGTGATCTCTGTATTGGAGGTGATAGTATTCAAATGCTACAGGAGACATCTGCCGTTTTAAGAGTTGTTCCATATGTTAAGGTATTTGCCAGAGTTGCTCCTGAGCAAAAAGAACTCATTATGACTACTTTTAAAACGGTGGGGAGGATGACACTTATGTGTGGGGATGGAACAAATGACGTGGGAGCTTTGAAACAAGCTCATGTTGGCGTTGCTCTGTTAAATGCTGTGCCTCCTATCCAAAGTGACCACTCTTCTTCAGAAACATCTAAGGATGAAAAAGCAAAACCTGGCAAAGCAAAGAAAACTAAGTATGCATTGGATGTAGCCGGAAAGCCCATCAGTCTAAACGGGGAAAGTCCTCCCAAGGGGAAAGTGACTGCGAAGACGGATCCCACTACCCACCCCTCAGGAAGTCGCCATTTGACTGCTGCAGAGATGCAGAGGCAGAAGCTAAAGAAGATGATGGATGAACTAAATGAGGAGGGCGATGGACGTGCAGCTCCCATTGTCAAGCTCGGGGATGCCTCCATGGCTTCTCCATTCACAGCAAAGCATGCCTCAGTCGCTCCTACCACTGACATAATTCGTCAGGGTAGGAGCACTCTTGTTACCACCCTCCAAATGTTCAAAATACTTGGACTCAACTGCCTCGCCACGGCATATGTGCTGAGTGTGATGTATTTGGATGGTGTGAAATTGGGGGACGTTCAAGCCACCATCAGTGGAGTATTCACAGCTGCATTTTTCCTTTTCATCTCACATGCCCGGCCACTTCCAACCCTCTCAGCCGAAAGGCCTCATCCCCATGTCTTTTGCTCCTATGTCTTACTCTCTCTATTGGGTCAGTTTGCAATTCACATAGTTTTCTTGATGTCTTCAGTGAAGGAAGCGGAGAAACACATGCCCGATGAATGCATAGAGCCAGACTCAGAATTTCATCCGAATTTGGTAAACACAGTTTCATACATGGTGAGCATGATGCTTCAAGTGGCCACTTTTGCTGTGAATTACATGGGGCATCCATTCAACCAGAGCATCTCAGAGAACAAGCCGTTCCGTTATGCACTGTTGGGTGCTGTCGTTTTCTTCACAGTCATAACTTCTGACCTGTTTCGAAATCTGAATGATTGGTTGAAATTGGTTCCTTTGCCTGTGGGATTGAGAGACAAGCTTTTGCTTTGGGCTTTGCTCATGTTTTTGTGCTGCTACTCATGGGAGAGACTCTTGAGATGGGCCTTCCCGGGTAAAATCCCTGCGTGGAAGAAACGACAACGGCTGGCCGCTGCTAATTTAGAGAAGAAGCGAGTCTGA 2082 45.44 MEFRGVVGLDAAMDSEMDLSRVPMRTMEILASCHALVFVDNKLVGDPLEKAALKGIDWSYKSDEKATPKKGSGHAVQIVQRHHFASHLKRMAVVVRVQEEFFSFVKGAPETIQERLIDVPLSYVETYKKYTRQGSRVLALAFKSIPDMTVSEARSLDRDIVESDLIFAGFAVFNCPIRADSAKVLSELGGSSHDMVMITGDQALTACHVAGQVHIISKPALILTQKREREGYEWISPDEKETIPYSEKEVETLSETRDLCIGGDSIQMLQETSAVLRVVPYVKVFARVAPEQKELIMTTFKTVGRMTLMCGDGTNDVGALKQAHVGVALLNAVPPIQSDHSSSETSKDEKAKPGKAKKTKYALDVAGKPISLNGESPPKGKVTAKTDPTTHPSGSRHLTAAEMQRQKLKKMMDELNEEGDGRAAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAERPHPHVFCSYVLLSLLGQFAIHIVFLMSSVKEAEKHMPDECIEPDSEFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFRYALLGAVVFFTVITSDLFRNLNDWLKLVPLPVGLRDKLLLWALLMFLCCYSWERLLRWAFPGKIPAWKKRQRLAAANLEKKRV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17881287 17887281 - Bda007970.1 Bda11g01401 16509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01401 693 SUPERFAMILY Calcium ATPase, transmembrane domain M 455 671 IPR023298 -
Bda11g01401 693 Gene3D - 10 169 IPR023299 GO:0000166
Bda11g01401 693 SUPERFAMILY HAD-like 160 335 IPR036412 -
Bda11g01401 693 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 1 651 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Bda11g01401 693 Coils Coil 398 418 - -
Bda11g01401 693 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 24 179 IPR023299 GO:0000166
Bda11g01401 693 MobiDBLite consensus disorder prediction 342 362 - -
Bda11g01401 693 Pfam Cation transport ATPase (P-type) 41 115 - -
Bda11g01401 693 Gene3D - 170 344 IPR023214 -
Bda11g01401 693 MobiDBLite consensus disorder prediction 336 396 - -
Bda11g01401 693 PRINTS P-type cation-transporting ATPase superfamily signature 310 329 - -
Bda11g01401 693 PRINTS P-type cation-transporting ATPase superfamily signature 191 201 - -
Bda11g01401 693 PANTHER CATION-TRANSPORTING ATPASE 1 685 - -
Bda11g01401 693 ProSitePatterns Hypothetical cof family signature 2. 310 332 - -
Bda11g01401 693 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 685 - -
Bda11g01401 693 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 278 329 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01401 Bda-Chr11:17881287 Bda05g00593 Bda-Chr5:54002479 1.36E-11 dispersed
Bda11g01401 Bda-Chr11:17881287 Bda07g01516 Bda-Chr7:28211401 5.78E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01401 K14950 - vvi:100257916 1150.19