Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01417 TCTTCGTCGGAACCGAAAAAGAACAAGCAAATGAGAGATACCAGCAGGCACCCACATTTCAGAGGCGTTCGGAAGCGCAGTTGGGGCAAATGGGTGTCTGAAATTCGCGAGCCTCGCAATAAATCGCGCATTTGGCTCGGAACTTTCCCGACGCCGGAAATGGCTGCCAGAGCTCACGACGTCGCCGCTTTAAGCATCAAAGGTAATTCCGCAATTCTTAACTTCCCCGACCTCGTTGACTTTCTTCCACGCCCTGTATCTCTCGCTCCGAGAGATGTCCAAGCGGCGGCAGTGAAGAAATCTTGGTTTCTAAAGAGAAGAGTTCTGCGACCAATGAAGGGCATTTTTGGATTTTTGCAGGACACGTGCTCTGCACGTGGTTTATTTAACGGAAGTTTGAACGGTAGGGTTTAA 414 50.0 SSSEPKKNKQMRDTSRHPHFRGVRKRSWGKWVSEIREPRNKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPDLVDFLPRPVSLAPRDVQAAAVKKSWFLKRRVLRPMKGIFGFLQDTCSARGLFNGSLNGRV 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18701320 18701733 + Bda007994.1 Bda11g01417 16525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01417 137 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Bda11g01417 137 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Bda11g01417 137 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Bda11g01417 137 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 99 - -
Bda11g01417 137 MobiDBLite consensus disorder prediction 1 26 - -
Bda11g01417 137 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Bda11g01417 137 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Bda11g01417 137 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 5 99 - -
Bda11g01417 137 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Bda11g01417 137 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Bda11g01417 137 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Bda11g01417 137 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01417 Bda-Chr11:18701320 Bda13g01332 Bda-Chr13:35584239 3.69E-53 dispersed
Bda11g01417 Bda-Chr11:18701320 Bda01g00937 Bda-Chr1:42745157 5.12E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16690 PF00847 AP2 5.00E-15 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01417 K09286 - cpap:110821992 172.555