Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda11g01424 | ATGTCATCGTCCAATTCTCCATGTGCGGCCTGCAAGCTTCTGAGGCGTAAATGTCCGCAAGAGTGTGTGTTTGCACCGTATTTTCCACCAGATCAGCCTCAGAAATTCGCTAATGTTCATAAGGTGTTCGGCGCAAGCAACGTCTCCAAGCTACTCAATGAACTCGACGCTAGGCACCGTGAAGACGCAGTCAACTCTCTGGCGTACGAGGCGGAGTTTCGTCTCCGTGACCCAGTCTACGGCTGCGTCGGTCTGATCTCCGTTCTTCAGCACAGACTAAAGCAAATGCAGACCGATCTAATTAATGCCAAAAAAGAGCTCGCCAGCTACATCGGCCCTCAGGCAATTTTTCCTGTAATGCAACCTCCGACAGCGCTAATGGCGCAACAACATCCAGAAAATCCTTCGTCTTTTTCTCTGATGCCTTATAACATGCCGCCCATGATGGGTATCCCGACGGGTCCTTCTGGGCAACTTATGATTCGTGAGCCTCATCAACAACAACAACCACAGCAGCAACAGCAACAGCAACAGCAACACCAGCTTCATCAGCAACAGTTGTTTGAGGCTCAGCAATTGGCTGCAGCCGTTGCGGCTAGAGAGCAGCAAGAGATGTTTAGAGCTTATGAGCAAAAGCAACAACAAACTCACCACAGACACCATCCCCAGCCGCAGCAGCAAGAGCTTTTACGGTTGAATCCTGGGTTCGACGCAGCCGCAACAGTTTCCGCAAGTGGGTTTAATCAGCTGAATAACGCTTCTGCTTTATCACCTTCCTTGGCTCTGGGTACTTTTGATAACGCGTACCACCTTCAACCAGAGCTTTCGGAACATCCCCATACCCACCATCATCATCAACTCCAGGCTCAGCTTTTGCTCCAACAGAAGCAGCCACAACCACCTAATCAGGGACAGCAATCACAGCTTCTACAGCAGCATAAGACGGAAGGTGAGGACGATAGAATTGTCGGTCCCTCTCATTGA | 984 | 50.3 | MSSSNSPCAACKLLRRKCPQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELDARHREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHRLKQMQTDLINAKKELASYIGPQAIFPVMQPPTALMAQQHPENPSSFSLMPYNMPPMMGIPTGPSGQLMIREPHQQQQPQQQQQQQQQHQLHQQQLFEAQQLAAAVAAREQQEMFRAYEQKQQQTHHRHHPQPQQQELLRLNPGFDAAATVSASGFNQLNNASALSPSLALGTFDNAYHLQPELSEHPHTHHHHQLQAQLLLQQKQPQPPNQGQQSQLLQQHKTEGEDDRIVGPSH | 327 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 18932366 | 18933349 | - | Bda008003.1 | Bda11g01424 | 16532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda11g01424 | 327 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Bda11g01424 | 327 | MobiDBLite | consensus disorder prediction | 294 | 312 | - | - | |
| Bda11g01424 | 327 | MobiDBLite | consensus disorder prediction | 313 | 327 | - | - | |
| Bda11g01424 | 327 | Coils | Coil | 86 | 106 | - | - | |
| Bda11g01424 | 327 | MobiDBLite | consensus disorder prediction | 294 | 327 | - | - | |
| Bda11g01424 | 327 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 1 | 301 | - | - | |
| Bda11g01424 | 327 | MobiDBLite | consensus disorder prediction | 164 | 183 | - | - | |
| Bda11g01424 | 327 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 103 | IPR004883 | - | |
| Bda11g01424 | 327 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 301 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda07g01123 | Bda-Chr7:13134567 | Bda11g01424 | Bda-Chr11:18932366 | 7.63E-54 | dispersed | |
| Bda10g00531 | Bda-Chr10:39045475 | Bda11g01424 | Bda-Chr11:18932366 | 5.40E-32 | dispersed | |
| Bda11g01424 | Bda-Chr11:18932366 | Bda13g01832 | Bda-Chr13:42352205 | 9.81E-53 | dispersed | |
| Bda11g01424 | Bda-Chr11:18932366 | Bda14g01228 | Bda-Chr14:12457879 | 1.60E-137 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16693 | PF03195 | LOB | 2.00E-40 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda11g01424 | - | - | jre:109018950 | 334.724 |