Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01424 ATGTCATCGTCCAATTCTCCATGTGCGGCCTGCAAGCTTCTGAGGCGTAAATGTCCGCAAGAGTGTGTGTTTGCACCGTATTTTCCACCAGATCAGCCTCAGAAATTCGCTAATGTTCATAAGGTGTTCGGCGCAAGCAACGTCTCCAAGCTACTCAATGAACTCGACGCTAGGCACCGTGAAGACGCAGTCAACTCTCTGGCGTACGAGGCGGAGTTTCGTCTCCGTGACCCAGTCTACGGCTGCGTCGGTCTGATCTCCGTTCTTCAGCACAGACTAAAGCAAATGCAGACCGATCTAATTAATGCCAAAAAAGAGCTCGCCAGCTACATCGGCCCTCAGGCAATTTTTCCTGTAATGCAACCTCCGACAGCGCTAATGGCGCAACAACATCCAGAAAATCCTTCGTCTTTTTCTCTGATGCCTTATAACATGCCGCCCATGATGGGTATCCCGACGGGTCCTTCTGGGCAACTTATGATTCGTGAGCCTCATCAACAACAACAACCACAGCAGCAACAGCAACAGCAACAGCAACACCAGCTTCATCAGCAACAGTTGTTTGAGGCTCAGCAATTGGCTGCAGCCGTTGCGGCTAGAGAGCAGCAAGAGATGTTTAGAGCTTATGAGCAAAAGCAACAACAAACTCACCACAGACACCATCCCCAGCCGCAGCAGCAAGAGCTTTTACGGTTGAATCCTGGGTTCGACGCAGCCGCAACAGTTTCCGCAAGTGGGTTTAATCAGCTGAATAACGCTTCTGCTTTATCACCTTCCTTGGCTCTGGGTACTTTTGATAACGCGTACCACCTTCAACCAGAGCTTTCGGAACATCCCCATACCCACCATCATCATCAACTCCAGGCTCAGCTTTTGCTCCAACAGAAGCAGCCACAACCACCTAATCAGGGACAGCAATCACAGCTTCTACAGCAGCATAAGACGGAAGGTGAGGACGATAGAATTGTCGGTCCCTCTCATTGA 984 50.3 MSSSNSPCAACKLLRRKCPQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELDARHREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHRLKQMQTDLINAKKELASYIGPQAIFPVMQPPTALMAQQHPENPSSFSLMPYNMPPMMGIPTGPSGQLMIREPHQQQQPQQQQQQQQQHQLHQQQLFEAQQLAAAVAAREQQEMFRAYEQKQQQTHHRHHPQPQQQELLRLNPGFDAAATVSASGFNQLNNASALSPSLALGTFDNAYHLQPELSEHPHTHHHHQLQAQLLLQQKQPQPPNQGQQSQLLQQHKTEGEDDRIVGPSH 327
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 18932366 18933349 - Bda008003.1 Bda11g01424 16532
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01424 327 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Bda11g01424 327 MobiDBLite consensus disorder prediction 294 312 - -
Bda11g01424 327 MobiDBLite consensus disorder prediction 313 327 - -
Bda11g01424 327 Coils Coil 86 106 - -
Bda11g01424 327 MobiDBLite consensus disorder prediction 294 327 - -
Bda11g01424 327 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 301 - -
Bda11g01424 327 MobiDBLite consensus disorder prediction 164 183 - -
Bda11g01424 327 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Bda11g01424 327 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 301 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01123 Bda-Chr7:13134567 Bda11g01424 Bda-Chr11:18932366 7.63E-54 dispersed
Bda10g00531 Bda-Chr10:39045475 Bda11g01424 Bda-Chr11:18932366 5.40E-32 dispersed
Bda11g01424 Bda-Chr11:18932366 Bda13g01832 Bda-Chr13:42352205 9.81E-53 dispersed
Bda11g01424 Bda-Chr11:18932366 Bda14g01228 Bda-Chr14:12457879 1.60E-137 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16693 PF03195 LOB 2.00E-40 No_clan Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01424 - - jre:109018950 334.724