Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda11g01437 | ATGGACTGGGTTCGCGGTCGCGAACTGGGTTCCGGTGCTTTTGCCACGGTCTCTTTGGCAGCTAAGAGGGATGATTCCAATCGCTTTCCCCCTTTGATGGCAGTTAAATCATCTCGATTCTCCTTCTCTCAATCGCTCAGGCACGAGAGAGAAGTTCTGCGCCAACTCGATTCTTGCCCGGAGATCATTCGCTGTATTGGCGACGATATTACCGTCGAAAGGGGCGAGAAGTTGTACAATCTCGTTTTGGAGTTCGCTTCCGGAGGCAGTCTGGTGGATCAACTGGACAAGTACGGCGGTCGTTTACCGGAATCGTTAGTTCGGCGATACGCCAGAACAGTATTGAAAGGGCTTGATTTCGTTCACTCCAAAGGGTTCGTCCACTGCGACATAAAACTGGGGAATATTCTGGTGGTCGAAAACGGTGATGTTAAGATTGCCGATTTTGGGCTGGCGAAGAGGGCCGGGAAAGATTTATCAACGGAGGAAGGAAACTTTGAGTTGAGAGGAACGCCCCTGTCTATTGCGCCGGAATCCGTCACCGACAACGAGCACGAGTCACCGTGCGACATTTGGGCTCTTGCCTGTGCCGTCGTCGAGATGCTCACCGGAAAGCCAGGCTGGAATTTCAGCAAGGAATTGAACATCTGTGCGGTACTCATGCGAATCGGCGTCGGAGACGAGTTGCCCATTATTCCAACTGATTTATCGGACGAAGGAAAAGATTTTCTGCGCAAGTGTTTCGTAAAGGATGCTACTAAAAGATGGAGCGCTCAAATGCTACTGAATCATCCATTTGTGGCCGAAGATCCTGTTCCATCGAAGGATCCTGTTTCACCATCGCCGTCGCCGAGGTCTCCTTTCGACCTGACGCATTGGGCTTCCTCGGAGTTGACAACGATGCTGGCCACTCCCCTTTCGTGTATAGAAATCGCAGAGGAATCTGATGGACATGTCGAGACTGAACTAAATTTGTGCGTGACTTCTCAGGCGGACAGGATCCGGCGGCTAGCTACATCCGATGCAGCATGTGATTGGTTGGATTGGGAGGGATGGGTGAACGTGAGGTGA | 1071 | 51.54 | MDWVRGRELGSGAFATVSLAAKRDDSNRFPPLMAVKSSRFSFSQSLRHEREVLRQLDSCPEIIRCIGDDITVERGEKLYNLVLEFASGGSLVDQLDKYGGRLPESLVRRYARTVLKGLDFVHSKGFVHCDIKLGNILVVENGDVKIADFGLAKRAGKDLSTEEGNFELRGTPLSIAPESVTDNEHESPCDIWALACAVVEMLTGKPGWNFSKELNICAVLMRIGVGDELPIIPTDLSDEGKDFLRKCFVKDATKRWSAQMLLNHPFVAEDPVPSKDPVSPSPSPRSPFDLTHWASSELTTMLATPLSCIEIAEESDGHVETELNLCVTSQADRIRRLATSDAACDWLDWEGWVNVR | 356 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 19498934 | 19500004 | - | Bda008021.1 | Bda11g01437 | 16545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda11g01437 | 356 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 304 | IPR011009 | - | |
| Bda11g01437 | 356 | SMART | serkin_6 | 3 | 267 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bda11g01437 | 356 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 322 | - | - | |
| Bda11g01437 | 356 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 36 | IPR017441 | GO:0005524 | |
| Bda11g01437 | 356 | CDD | STKc_MAPKKK | 2 | 267 | - | - | |
| Bda11g01437 | 356 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 126 | 138 | IPR008271 | GO:0004672|GO:0006468 | |
| Bda11g01437 | 356 | Pfam | Protein kinase domain | 5 | 267 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bda11g01437 | 356 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 | 1 | 305 | - | - | |
| Bda11g01437 | 356 | ProSiteProfiles | Protein kinase domain profile. | 3 | 267 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bda11g01437 | 356 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 1 | 305 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda04g00245 | Bda11g01437 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00509 | Bda-Chr5:51972569 | Bda11g01437 | Bda-Chr11:19498934 | 1.79E-78 | dispersed | |
| Bda11g01437 | Bda-Chr11:19498934 | Bda11g01439 | Bda-Chr11:19521189 | 0 | dispersed | |
| Bda11g01437 | Bda-Chr11:19498934 | Bda11g01438 | Bda-Chr11:19518146 | 0 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 69937 | PF00069 | Pkinase | 1.40E-51 | CL0016 | Bda | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda11g01437 | - | - | zju:107424505 | 383.259 |